View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8039_low_4 (Length: 477)
Name: NF8039_low_4
Description: NF8039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8039_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 4 - 462
Target Start/End: Complemental strand, 4776171 - 4775713
Alignment:
| Q |
4 |
gcattcccggtgaataaactagcacaacaaatgcaagctcctactgtgacagatatgcaagccttaaatagagtattgcgctatctcaaatccaccatct |
103 |
Q |
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| T |
4776171 |
gcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaagagagtattgcgctatctcaaatccaccatct |
4776072 |
T |
|
| Q |
104 |
ccaatggactccatctcacgagatcttcaaatacaagcctcacaagcttttgtgatgcagattgggctggagacacaattgatcggaaatcgacaggtgc |
203 |
Q |
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| T |
4776071 |
ccaatggactccatctcacaagatcttcaaatacaaacctcacaagcttttgtgatgcagattaggcaggagacacaattgacaggaaatcaacaggtgc |
4775972 |
T |
|
| Q |
204 |
ttatttaatttattttggccctaatattatctcttggtcatgcaagaagcagccaactgttgcaaaatcgtcaactgaagctgaatatcgtactatagca |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775971 |
ttatttaatttattttggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagca |
4775872 |
T |
|
| Q |
304 |
gccactactcaagagttaatatgggttcaaaatttgttacaagaacttcaaattccattaactgcaccaacaatattctcagacaacattggagctacat |
403 |
Q |
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| T |
4775871 |
gccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacaatattctaagacaacattggagctacat |
4775772 |
T |
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| Q |
404 |
atctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatcat |
462 |
Q |
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| T |
4775771 |
atctatgtgcaaaccctgtctttcactctaggatgaagcatattgccatagattatcat |
4775713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 136 - 462
Target Start/End: Complemental strand, 43061400 - 43061074
Alignment:
| Q |
136 |
acaagcctcacaagcttttgtgatgcagattgggctggagacacaattgatcggaaatcgacaggtgcttatttaatttattttggccctaatattatct |
235 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||||||| |
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| T |
43061400 |
acaagcctcacaaacttttgtgatgcagattgggcaggagacacaattgacaggatatgaacaggtgcttatttcatttattttggccctaatattatct |
43061301 |
T |
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| Q |
236 |
cttggtcatgcaagaagcagccaactgttgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagagttaatatgggttcaaaa |
335 |
Q |
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| T |
43061300 |
cttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatatcggactatagcagccactactcaggaattaatatgggttcaaaa |
43061201 |
T |
|
| Q |
336 |
tttgttacaagaacttcaaattccattaactgcaccaacaatattctcagacaacattggagctacatatctatgtgcaaacccagtttttcactctagg |
435 |
Q |
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| T |
43061200 |
cttgttacaagaacttcaaattccattaactgcaccaacgatattctcagacaacattagagctacatatctatgtgcaaaccctgtttttcactatagg |
43061101 |
T |
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| Q |
436 |
atgaaagatattgccatagattatcat |
462 |
Q |
| |
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|||||| | |||||||||||||||||| |
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| T |
43061100 |
atgaaacacattgccatagattatcat |
43061074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 441
Target Start/End: Original strand, 45192874 - 45192927
Alignment:
| Q |
388 |
aacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaa |
441 |
Q |
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| T |
45192874 |
aacattggagctacatatctatgtgcaaaccctgtccttcactctcggatgaaa |
45192927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 462
Target Start/End: Original strand, 25450346 - 25450426
Alignment:
| Q |
382 |
tcagacaacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatcat |
462 |
Q |
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||||||||||| || || |||||||||||||| |||||||||||||| || | ||||| || |||| |||||||||||| |
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| T |
25450346 |
tcagacaacatcggtgcaacatatctatgtgcgaacccagtttttcatactcgaatgaagcatcttgcaatagattatcat |
25450426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 462
Target Start/End: Complemental strand, 2607367 - 2607287
Alignment:
| Q |
382 |
tcagacaacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatcat |
462 |
Q |
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||||||||||| || || |||||||||||||| |||||||||||||| || | ||||| || |||| |||||||||||| |
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| T |
2607367 |
tcagacaacatcggtgcaacatatctatgtgcgaacccagtttttcatactcgaatgaagcatcttgcaatagattatcat |
2607287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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