View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8039_low_6 (Length: 461)
Name: NF8039_low_6
Description: NF8039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8039_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 7 - 443
Target Start/End: Original strand, 8985777 - 8986221
Alignment:
| Q |
7 |
gaagcagagaaataatatgatttgga--gtgataaagttaatgaaaccaatgtggtggacagagcaaaacatatgcttgaccaatggttggcaactcaaa |
104 |
Q |
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| T |
8985777 |
gaagcaaagaaataatatgatttggaaagtgataaagttaatgaagccaatgtggtggacagagcaaaacatatgcttgaccagtggttggcaactcaaa |
8985876 |
T |
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| Q |
105 |
tgg-----aattcagtgaatgcacctataatacatgttggaagggcaaaacggttgaagccacaataagggatatttaaatgtaatgtagatgcatcttt |
199 |
Q |
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| T |
8985877 |
tggtacacaattcagtgaatgcacctataatacatgttggaagggcaaaacggttgaagccacaacaaatgatatttaaatgtaatgtagatgcatcctt |
8985976 |
T |
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| Q |
200 |
ttccaaagaggataaaaaagttgggatcggtatgtgcattcca-gattatacatgaacttttgttttggctagaacataatggtttagtccaatctgtga |
298 |
Q |
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| T |
8985977 |
tttcaaagaggataacaaagttgggatcggtatgtgcattccaagattatacataaacttttgctttggctagaacataatggtttagttcaatttgtga |
8986076 |
T |
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| Q |
299 |
tgttcatatatagatgaagctcttggtctctctcagctttagaatggctccatgagttacatttgggacccatagattttaggatagatgcaaagagagt |
398 |
Q |
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| T |
8986077 |
tgttcatatatagatgaagctcttggtctctctcagcattagaatggctccatgagttacatttgggacccatagattttaggacggatgcaaagagagt |
8986176 |
T |
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| Q |
399 |
ggtcgataattttttctcaataaagactaacattattgaacttgg |
443 |
Q |
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| T |
8986177 |
ggtcgataattttttctcaataaagattaacattactgaacttgg |
8986221 |
T |
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