View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8039_low_7 (Length: 438)

Name: NF8039_low_7
Description: NF8039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8039_low_7
NF8039_low_7
[»] chr1 (27 HSPs)
chr1 (52-425)||(8206020-8206397)
chr1 (1-51)||(24635926-24635976)
chr1 (1-51)||(43452542-43452592)
chr1 (1-51)||(48762347-48762397)
chr1 (2-51)||(19897777-19897826)
chr1 (1-52)||(28375463-28375514)
chr1 (1-51)||(4097924-4097974)
chr1 (1-51)||(18618835-18618885)
chr1 (1-51)||(25889044-25889094)
chr1 (1-51)||(49936953-49937003)
chr1 (1-51)||(50351803-50351853)
chr1 (1-53)||(20434738-20434790)
chr1 (1-56)||(16975949-16976004)
chr1 (1-51)||(6314115-6314165)
chr1 (1-51)||(11421594-11421644)
chr1 (1-55)||(34369656-34369710)
chr1 (1-48)||(21256788-21256835)
chr1 (1-48)||(23175538-23175585)
chr1 (5-44)||(41033946-41033985)
chr1 (1-49)||(13590469-13590517)
chr1 (5-44)||(37228364-37228403)
chr1 (1-51)||(18056784-18056833)
chr1 (1-47)||(33097409-33097455)
chr1 (1-51)||(35198197-35198247)
chr1 (1-51)||(37639341-37639391)
chr1 (1-47)||(51801749-51801795)
chr1 (4-48)||(20507300-20507344)
[»] chr2 (17 HSPs)
chr2 (1-53)||(18762865-18762917)
chr2 (1-51)||(9143585-9143635)
chr2 (1-51)||(15016582-15016632)
chr2 (1-51)||(39355035-39355085)
chr2 (2-49)||(34464713-34464760)
chr2 (1-51)||(7487270-7487320)
chr2 (1-51)||(1292195-1292245)
chr2 (1-51)||(2263573-2263623)
chr2 (1-51)||(8149831-8149881)
chr2 (1-51)||(8154455-8154505)
chr2 (1-49)||(5098718-5098766)
chr2 (5-52)||(3925577-3925624)
chr2 (5-44)||(21155441-21155480)
chr2 (5-44)||(27974291-27974330)
chr2 (5-44)||(28060820-28060859)
chr2 (1-51)||(18298127-18298176)
chr2 (1-51)||(25192892-25192941)
[»] chr7 (20 HSPs)
chr7 (1-52)||(31660068-31660119)
chr7 (1-51)||(30884238-30884288)
chr7 (1-51)||(41911125-41911175)
chr7 (1-51)||(46358520-46358570)
chr7 (1-52)||(16933260-16933311)
chr7 (1-52)||(16938643-16938694)
chr7 (1-53)||(763695-763747)
chr7 (4-51)||(47340146-47340193)
chr7 (1-51)||(20000690-20000740)
chr7 (1-48)||(24359874-24359921)
chr7 (1-58)||(45402886-45402943)
chr7 (1-36)||(35736963-35736998)
chr7 (1-51)||(5757386-5757436)
chr7 (1-51)||(44141267-44141317)
chr7 (1-48)||(11732663-11732710)
chr7 (1-51)||(48305237-48305285)
chr7 (1-51)||(6797401-6797451)
chr7 (1-51)||(15974952-15975001)
chr7 (1-51)||(39007665-39007715)
chr7 (2-51)||(30428873-30428921)
[»] chr4 (28 HSPs)
chr4 (1-52)||(36011842-36011893)
chr4 (1-51)||(15051152-15051202)
chr4 (1-51)||(30597699-30597749)
chr4 (1-51)||(35291564-35291614)
chr4 (1-51)||(46672439-46672489)
chr4 (1-51)||(49426073-49426123)
chr4 (1-51)||(51921281-51921331)
chr4 (1-54)||(53441317-53441370)
chr4 (1-53)||(49492528-49492580)
chr4 (1-51)||(13635741-13635791)
chr4 (1-51)||(55765481-55765531)
chr4 (2-51)||(10472497-10472546)
chr4 (1-51)||(1621875-1621925)
chr4 (1-48)||(30357810-30357857)
chr4 (1-51)||(11785974-11786024)
chr4 (1-51)||(11798141-11798191)
chr4 (1-47)||(38010145-38010191)
chr4 (1-48)||(1729631-1729678)
chr4 (1-48)||(20861583-20861630)
chr4 (1-51)||(25574144-25574194)
chr4 (1-51)||(27865753-27865803)
chr4 (1-49)||(24686574-24686622)
chr4 (5-44)||(805109-805148)
chr4 (1-52)||(45255974-45256024)
chr4 (1-51)||(26578205-26578255)
chr4 (1-51)||(27764240-27764289)
chr4 (1-51)||(50643743-50643792)
chr4 (1-49)||(38244946-38244994)
[»] chr3 (24 HSPs)
chr3 (1-52)||(46237774-46237825)
chr3 (1-51)||(3475423-3475473)
chr3 (1-51)||(6097700-6097750)
chr3 (1-51)||(19284671-19284721)
chr3 (1-51)||(47335032-47335082)
chr3 (1-51)||(54379163-54379213)
chr3 (1-51)||(2941942-2941992)
chr3 (1-51)||(9106267-9106317)
chr3 (1-51)||(9595996-9596046)
chr3 (1-51)||(30947927-30947977)
chr3 (1-50)||(33414029-33414078)
chr3 (1-52)||(10986351-10986402)
chr3 (1-47)||(26960630-26960676)
chr3 (1-48)||(41192366-41192413)
chr3 (1-48)||(51846796-51846843)
chr3 (1-51)||(26662554-26662604)
chr3 (2-48)||(34563364-34563410)
chr3 (1-51)||(51682018-51682068)
chr3 (1-49)||(32232993-32233041)
chr3 (1-53)||(51362454-51362505)
chr3 (1-52)||(23755284-23755335)
chr3 (5-51)||(9180111-9180157)
chr3 (1-51)||(19385331-19385380)
chr3 (1-51)||(47728388-47728438)
[»] chr8 (24 HSPs)
chr8 (1-51)||(10237354-10237404)
chr8 (1-51)||(15227030-15227080)
chr8 (1-51)||(41099182-41099232)
chr8 (1-51)||(43690640-43690690)
chr8 (1-53)||(34633337-34633389)
chr8 (1-51)||(1150039-1150089)
chr8 (1-48)||(9852273-9852320)
chr8 (1-48)||(34648144-34648191)
chr8 (1-51)||(19784271-19784321)
chr8 (1-51)||(30413914-30413964)
chr8 (1-51)||(41451105-41451155)
chr8 (1-51)||(15260867-15260917)
chr8 (1-44)||(23396484-23396527)
chr8 (1-51)||(2522867-2522917)
chr8 (1-51)||(7857680-7857730)
chr8 (2-48)||(40023279-40023325)
chr8 (4-53)||(40012201-40012249)
chr8 (1-48)||(35302602-35302649)
chr8 (1-52)||(39021974-39022024)
chr8 (1-51)||(1208709-1208758)
chr8 (5-51)||(18022053-18022099)
chr8 (1-51)||(32987461-32987510)
chr8 (1-47)||(40247301-40247347)
chr8 (5-53)||(42433699-42433746)
[»] chr6 (12 HSPs)
chr6 (1-51)||(1536912-1536962)
chr6 (1-51)||(7089082-7089132)
chr6 (1-47)||(6900807-6900853)
chr6 (1-51)||(31216662-31216712)
chr6 (1-48)||(30908655-30908702)
chr6 (1-51)||(1449542-1449592)
chr6 (1-51)||(15493174-15493224)
chr6 (1-50)||(34870102-34870151)
chr6 (1-53)||(33346387-33346438)
chr6 (1-53)||(35119237-35119284)
chr6 (1-46)||(27079946-27079991)
chr6 (2-51)||(32556344-32556393)
[»] chr5 (14 HSPs)
chr5 (1-51)||(13552983-13553033)
chr5 (1-51)||(15416664-15416714)
chr5 (4-53)||(14394466-14394515)
chr5 (1-52)||(3884051-3884102)
chr5 (1-52)||(30783434-30783485)
chr5 (1-47)||(14940372-14940418)
chr5 (1-51)||(26637853-26637903)
chr5 (1-53)||(16552655-16552707)
chr5 (1-53)||(33868153-33868205)
chr5 (1-51)||(37456680-37456730)
chr5 (1-51)||(28070169-28070218)
chr5 (1-49)||(13362772-13362819)
chr5 (1-49)||(16668810-16668858)
chr5 (1-49)||(25017233-25017280)
[»] scaffold0571 (1 HSPs)
scaffold0571 (1-51)||(692-742)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-51)||(33684-33734)
[»] scaffold0581 (1 HSPs)
scaffold0581 (1-51)||(8437-8487)
[»] scaffold0074 (1 HSPs)
scaffold0074 (1-51)||(24274-24324)
[»] scaffold0460 (1 HSPs)
scaffold0460 (1-51)||(1604-1654)
[»] scaffold0238 (1 HSPs)
scaffold0238 (1-51)||(25248-25297)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-51)||(209326-209376)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-51)||(450202-450252)
[»] scaffold0558 (2 HSPs)
scaffold0558 (5-50)||(2448-2492)
scaffold0558 (5-50)||(5860-5904)


Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 52 - 425
Target Start/End: Original strand, 8206020 - 8206397
Alignment:
Q  52 ctatctaccatggagggtcaca--aaggatcaacccagactctcattgccgtcaacttctttgagcaaaatgataaattgcaatgctaggcaaatagtaa 149  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8206020 ctatctaccatggagggtcacataaaggatcaacccagacgctcattgccgtcaacttctttgagcaaaatgataaattgcaatgctaggcaaatagtaa 8206119  T
Q  150 cgtagagaacaataaaattgggaatggaaagatgcagaagtgatcttacaggaaatattagagccccttgtaatatattttcagttttatttgccgactg 249  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8206120 cgtagagaacaataaaattgggaatggaaagatacagaagtgatcttacaggaaatattagagccccttgtaatatattttcagttttatttgccgactg 8206219  T
Q  250 ttgttttcattcattactctatctgttacattacaggaattgatccttatgttcggtgatatatcccatcggtgaagaaataatgatttaaaagttcgtc 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8206220 ttgttttcattcattactctatctgttacattacaggaattgatccttatgttcggtgatatatcccatcggtgaagaaataatgattcaaaagttcgtc 8206319  T
Q  350 tgcattttctc--nnnnnnnnttgaagtattattagttatcagtttatatacattcatcggatactacagctgatgtc 425  Q
    |||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8206320 tgcattttctcataaaaaaaattgaagtattattagttatcagtttatatacattcatcggatactacagctggtgtc 8206397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 24635976 - 24635926
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24635976 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 24635926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 43452592 - 43452542
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43452592 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 43452542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 48762347 - 48762397
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48762347 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 48762397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 19897777 - 19897826
Alignment:
Q  2 tgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19897777 tgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 19897826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 28375514 - 28375463
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccc 52  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28375514 gtgtttatgcacggtgcataaagaaataacttatgcaccataacttttgccc 28375463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4097924 - 4097974
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4097924 gtgtttatgcacggtgcataaggaaatagcttatgcaccataacttttgcc 4097974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 18618885 - 18618835
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18618885 gtgtttatgcacggtgcataaggaaataatttatgcaccataacttttgcc 18618835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25889044 - 25889094
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25889044 gtgtttatgcacggtgcataaggaaatagcttatgcaccataacttttgcc 25889094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 49936953 - 49937003
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  49936953 gtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttgcc 49937003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 50351853 - 50351803
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  50351853 gtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttgcc 50351803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 20434738 - 20434790
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccct 53  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  20434738 gtgtttatgcacggtgcataaggaaatggcttatgcaccataacttttgccct 20434790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16976004 - 16975949
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccctatc 56  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||    
T  16976004 gtgtttatacacggtgcataaggaaataacttatgaaccataacttttgccttatc 16975949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6314165 - 6314115
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  6314165 gtgtttatgcacggtgcataaggaaatggcttatgcaccataacttttgcc 6314115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 11421644 - 11421594
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  11421644 gtgtttatgcacggtgcataaggaaatgatttatgcaccataacttttgcc 11421594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 34369710 - 34369656
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccctat 55  Q
    |||||||||||||||||||||| ||||  |||||||||||||| |||||||||||    
T  34369710 gtgtttatgcacggtgcataagaaaatggcttatgcaccataatttttgccctat 34369656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 21256788 - 21256835
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 48  Q
    |||||||||||||||||||||| ||||  |||||||||||||||||||    
T  21256788 gtgtttatgcacggtgcataagaaaatggcttatgcaccataactttt 21256835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 23175538 - 23175585
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 48  Q
    |||||||||||||| ||||||||||||  |||||||||||||||||||    
T  23175538 gtgtttatgcacggcgcataaggaaatggcttatgcaccataactttt 23175585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 41033946 - 41033985
Alignment:
Q  5 ttatgcacggtgcataaggaaataacttatgcaccataac 44  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  41033946 ttatgcacggtgcataaggaaatgacttatgcaccataac 41033985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13590517 - 13590469
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttg 49  Q
    ||||||||||| ||||||||||||||| |||||||||  ||||||||||    
T  13590517 gtgtttatgcagggtgcataaggaaatgacttatgcataataacttttg 13590469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 37228364 - 37228403
Alignment:
Q  5 ttatgcacggtgcataaggaaataacttatgcaccataac 44  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  37228364 ttatgcacggtgcataaggaaatggcttatgcaccataac 37228403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 18056833 - 18056784
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||||||||    
T  18056833 gtgtttatgcacggtgcataagg-atttccttatgcaccataacttttgcc 18056784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33097455 - 33097409
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 47  Q
    ||||||||||| ||||||||||||||| |||||||||  ||||||||    
T  33097455 gtgtttatgcagggtgcataaggaaatgacttatgcataataacttt 33097409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 35198197 - 35198247
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||| |||||||||||||||  ||||||||  ||||||||||||    
T  35198197 gtgtttatgcagggtgcataaggaaatgtcttatgcataataacttttgcc 35198247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37639391 - 37639341
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||| |||||||||||||||  ||||||||  ||||||||||||    
T  37639391 gtgtttatgcagggtgcataaggaaatgtcttatgcataataacttttgcc 37639341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 51801749 - 51801795
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 47  Q
    ||||||||||| ||||||||||||||| |||||||||  ||||||||    
T  51801749 gtgtttatgcagggtgcataaggaaatgacttatgcataataacttt 51801795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 20507300 - 20507344
Alignment:
Q  4 tttatgcacggtgcataaggaaataacttatgcaccataactttt 48  Q
    |||||||||  |||||||||||||  |||||||||||||||||||    
T  20507300 tttatgcacaatgcataaggaaatggcttatgcaccataactttt 20507344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18762917 - 18762865
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccct 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18762917 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccct 18762865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 9143635 - 9143585
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9143635 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 9143585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15016582 - 15016632
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15016582 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 15016632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 39355085 - 39355035
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39355085 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 39355035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 34464760 - 34464713
Alignment:
Q  2 tgtttatgcacggtgcataaggaaataacttatgcaccataacttttg 49  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34464760 tgtttatgcacggtgcataaggaaataacttatgcaccataacttttg 34464713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7487270 - 7487320
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7487270 gtgtttatgcacggtgcataaggaaatagcttatgcaccataacttttgcc 7487320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 1292195 - 1292245
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  1292195 gtgtttatgtacggtgcataagaaaataacttatgcaccataacttttgcc 1292245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 2263623 - 2263573
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||| |||||  ||||||||||||||||||||||    
T  2263623 gtgtttatgcacggtgcataaagaaatggcttatgcaccataacttttgcc 2263573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8149881 - 8149831
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||| |||||||||||||  ||||||||||||||||||||||    
T  8149881 gtgtttatgcacgatgcataaggaaatggcttatgcaccataacttttgcc 8149831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8154505 - 8154455
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||| |||||||||||||  ||||||||||||||||||||||    
T  8154505 gtgtttatgcacgatgcataaggaaatggcttatgcaccataacttttgcc 8154455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 5098766 - 5098718
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttg 49  Q
    ||||||||||| ||||||||||||||| |||||||||  ||||||||||    
T  5098766 gtgtttatgcagggtgcataaggaaatgacttatgcataataacttttg 5098718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 3925624 - 3925577
Alignment:
Q  5 ttatgcacggtgcataaggaaataacttatgcaccataacttttgccc 52  Q
    ||||||| ||||||||||| ||  ||||||||||||||||||||||||    
T  3925624 ttatgcagggtgcataagggaaggacttatgcaccataacttttgccc 3925577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 21155480 - 21155441
Alignment:
Q  5 ttatgcacggtgcataaggaaataacttatgcaccataac 44  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  21155480 ttatgcacggtgcataaggaaatggcttatgcaccataac 21155441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 27974291 - 27974330
Alignment:
Q  5 ttatgcacggtgcataaggaaataacttatgcaccataac 44  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  27974291 ttatgcacggtgcataaggaaatggcttatgcaccataac 27974330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 28060820 - 28060859
Alignment:
Q  5 ttatgcacggtgcataaggaaataacttatgcaccataac 44  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  28060820 ttatgcacggtgcataaggaaatggcttatgcaccataac 28060859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 18298127 - 18298176
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||||||||    
T  18298127 gtgtttatgcacggtgcataagg-atttccttatgcaccataacttttgcc 18298176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25192941 - 25192892
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||||||||    
T  25192941 gtgtttatgcacggtgcataagg-atttccttatgcaccataacttttgcc 25192892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 31660119 - 31660068
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccc 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31660119 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccc 31660068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30884238 - 30884288
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30884238 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 30884288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41911125 - 41911175
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41911125 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 41911175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 46358570 - 46358520
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46358570 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 46358520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16933260 - 16933311
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccc 52  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16933260 gtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttgccc 16933311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16938643 - 16938694
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccc 52  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16938643 gtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttgccc 16938694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 763747 - 763695
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccct 53  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  763747 gtgtttatgcacggtgcataaggaaatggcttatgcaccataacttttgccct 763695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 47340193 - 47340146
Alignment:
Q  4 tttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47340193 tttatgcacggtgcataagaaaataacttatgcaccataacttttgcc 47340146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 20000690 - 20000740
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  20000690 gtgtttatgcacggtgcataagtaaatgacttatgcaccataacttttgcc 20000740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 24359921 - 24359874
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 48  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  24359921 gtgttgatgcacggtgcataaggaaatgacttatgcaccataactttt 24359874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 45402886 - 45402943
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccctatcta 58  Q
    ||||||||||  |||||||||||||||||||||||||  ||||||||||||| |||||    
T  45402886 gtgtttatgctgggtgcataaggaaataacttatgcataataacttttgcccaatcta 45402943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 35736998 - 35736963
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  35736998 gtgtttatgcacggtgcataaggaaataacttatgc 35736963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5757436 - 5757386
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||  ||||||||  ||||||||||||    
T  5757436 gtgtttatgcacggtgcataaggaaatgtcttatgcataataacttttgcc 5757386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 44141267 - 44141317
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||| ||||||||||||||| |||||||||  ||||||||||||    
T  44141267 gtgtttatgcagggtgcataaggaaatgacttatgcatgataacttttgcc 44141317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11732663 - 11732710
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 48  Q
    |||||||||||| ||||||||| ||||  |||||||||||||||||||    
T  11732663 gtgtttatgcacagtgcataagaaaatggcttatgcaccataactttt 11732710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 48305285 - 48305237
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||    ||||||||||||||||||||||    
T  48305285 gtgtttatgcacggtgcataaggaa--tccttatgcaccataacttttgcc 48305237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6797401 - 6797451
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||| | ||||||||||||| |||||||||  ||||||||||||    
T  6797401 gtgtttatgcaggatgcataaggaaatgacttatgcataataacttttgcc 6797451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15974952 - 15975001
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||||||||    
T  15974952 gtgtttatgcacggtgcataagg-atttccttatgcaccataacttttgcc 15975001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 39007665 - 39007715
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||| ||||||||||||||| |||||||||  ||||| ||||||    
T  39007665 gtgtttatgcagggtgcataaggaaatgacttatgcataataacctttgcc 39007715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 30428921 - 30428873
Alignment:
Q  2 tgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||| | |  ||||||||||||||||||||||    
T  30428921 tgtttatgcacggtgcataagg-atttccttatgcaccataacttttgcc 30428873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 36011893 - 36011842
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccc 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36011893 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccc 36011842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15051152 - 15051202
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15051152 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 15051202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 30597749 - 30597699
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30597749 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 30597699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 35291564 - 35291614
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35291564 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 35291614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 46672489 - 46672439
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46672489 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 46672439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 49426073 - 49426123
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49426073 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 49426123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 51921281 - 51921331
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51921281 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51921331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 53441370 - 53441317
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcccta 54  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  53441370 gtgtttatgcacgatgcataaggaaataacttatgcaccataacttttgcccta 53441317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 49492528 - 49492580
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccct 53  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49492528 gtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttgccct 49492580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 13635741 - 13635791
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13635741 gtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttgcc 13635791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 55765531 - 55765481
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  55765531 gtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttgcc 55765481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 10472546 - 10472497
Alignment:
Q  2 tgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10472546 tgtttatgcacggtgcataaggaaatgacttatgcaccataacttttgcc 10472497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1621925 - 1621875
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  1621925 gtgtttatgcacggtgcataaggaaatggcttatgcaccataacttttgcc 1621875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30357857 - 30357810
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 48  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  30357857 gtgtttatgcacggtgcataaggaaatgacttatgaaccataactttt 30357810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 11786024 - 11785974
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||||    
T  11786024 gtgtttatgcacggtgcataaggaaatggtttatgcaccataacttttgcc 11785974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 11798191 - 11798141
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||||    
T  11798191 gtgtttatgcacggtgcataaggaaatggtttatgcaccataacttttgcc 11798141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 38010191 - 38010145
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 47  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  38010191 gtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 38010145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1729631 - 1729678
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 48  Q
    |||||||||||||||| |||| ||||| ||||||||||||||||||||    
T  1729631 gtgtttatgcacggtgtataaagaaatgacttatgcaccataactttt 1729678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 20861630 - 20861583
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 48  Q
    |||||||||||||| ||||||||||||  |||||||||||||||||||    
T  20861630 gtgtttatgcacggcgcataaggaaatggcttatgcaccataactttt 20861583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25574144 - 25574194
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||| ||||||||||||||| |||||||||  ||||||||||||    
T  25574144 gtgtttatgcagggtgcataaggaaatgacttatgcataataacttttgcc 25574194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 27865753 - 27865803
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||| ||||||  ||||||||| ||||||||||||    
T  27865753 gtgtttatgcacggtgcatatggaaatggcttatgcactataacttttgcc 27865803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24686622 - 24686574
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttg 49  Q
    ||||||||||| ||||||||||||||| |||||||||  ||||||||||    
T  24686622 gtgtttatgcagggtgcataaggaaatgacttatgcataataacttttg 24686574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 805148 - 805109
Alignment:
Q  5 ttatgcacggtgcataaggaaataacttatgcaccataac 44  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  805148 ttatgcacggtgcataaggaaatggcttatgcaccataac 805109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 45256024 - 45255974
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccc 52  Q
    ||||||||||||||||||||||| | |  |||||||||||||||||||||||    
T  45256024 gtgtttatgcacggtgcataagg-atttccttatgcaccataacttttgccc 45255974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26578205 - 26578255
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||| ||||||| |||||  |||||||||||| |||||||||    
T  26578205 gtgtttatgcacgatgcataaagaaatggcttatgcaccatgacttttgcc 26578255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27764289 - 27764240
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||||||||    
T  27764289 gtgtttatgcacggtgcataagg-atttccttatgcaccataacttttgcc 27764240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 50643792 - 50643743
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||||||||    
T  50643792 gtgtttatgcacggtgcataagg-atttccttatgcaccataacttttgcc 50643743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 38244994 - 38244946
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttg 49  Q
    ||||||||| || ||||| ||||||||  ||||||||||||||||||||    
T  38244994 gtgtttatgaactgtgcagaaggaaatggcttatgcaccataacttttg 38244946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 46237774 - 46237825
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccc 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46237774 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccc 46237825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3475423 - 3475473
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3475423 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 3475473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6097700 - 6097750
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6097700 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 6097750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 19284721 - 19284671
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19284721 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 19284671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 47335082 - 47335032
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47335082 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 47335032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 54379213 - 54379163
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54379213 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 54379163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 2941942 - 2941992
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2941942 gtgtttatgcacggtacataaggaaataacttatgcaccataacttttgcc 2941992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 9106317 - 9106267
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9106317 gtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttgcc 9106267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9595996 - 9596046
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9595996 gtgtttatgcacggtgcataaggaaatagcttatgcaccataacttttgcc 9596046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30947927 - 30947977
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30947927 gtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttgcc 30947977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 33414029 - 33414078
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgc 50  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33414029 gtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttgc 33414078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10986402 - 10986351
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccc 52  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  10986402 gtgtttatgcacggtgcataaggaaataacttatacatcataacttttgccc 10986351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26960676 - 26960630
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 47  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  26960676 gtgtttatgcacggtgcataaggaaataacttatacaccataacttt 26960630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 41192366 - 41192413
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 48  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  41192366 gtgtttatgtacggtgcataaggaaatgacttatgcaccataactttt 41192413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 51846796 - 51846843
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 48  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||    
T  51846796 gtgtttatgcacggtgcataaggaaatggcttatgcaccataactttt 51846843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26662554 - 26662604
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  26662554 gtgtttatgcacggtgcataaggaaatggcttatgcacaataacttttgcc 26662604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 34563364 - 34563410
Alignment:
Q  2 tgtttatgcacggtgcataaggaaataacttatgcaccataactttt 48  Q
    ||||||||||||||||||||| ||||  |||||||||||||||||||    
T  34563364 tgtttatgcacggtgcataagaaaatggcttatgcaccataactttt 34563410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 51682018 - 51682068
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||| ||||||||||||||| |||||||||  ||||||||||||    
T  51682018 gtgtttatgcagggtgcataaggaaatgacttatgcataataacttttgcc 51682068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32233041 - 32232993
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttg 49  Q
    ||||||||||| ||||||||||||||| |||||||||  ||||||||||    
T  32233041 gtgtttatgcagggtgcataaggaaatgacttatgcataataacttttg 32232993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 51362454 - 51362505
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccct 53  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||||||||||    
T  51362454 gtgtttatgcacggtgcataagg-atttccttatgcaccataacttttgccct 51362505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 23755335 - 23755284
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccc 52  Q
    ||||||||||| |||||||||||||||  ||||||||  |||||||||||||    
T  23755335 gtgtttatgcagggtgcataaggaaatgtcttatgcataataacttttgccc 23755284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 9180111 - 9180157
Alignment:
Q  5 ttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||| ||||||||||| ||  |||||||||||||||||||||||    
T  9180111 ttatgcagggtgcataagggaaggacttatgcaccataacttttgcc 9180157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19385331 - 19385380
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||||||||    
T  19385331 gtgtttatgcacggtgcataagg-atttccttatgcaccataacttttgcc 19385380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 47728438 - 47728388
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||| |||||||||| |||| |||||||||  ||||||||||||    
T  47728438 gtgtttatgcagggtgcataagaaaatgacttatgcataataacttttgcc 47728388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10237404 - 10237354
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10237404 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 10237354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15227080 - 15227030
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15227080 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 15227030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41099232 - 41099182
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41099232 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 41099182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 43690690 - 43690640
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43690690 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 43690640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 34633337 - 34633389
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccct 53  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34633337 gtgtttatgcacggtgcataaggaaataacttatgtaccataacttttgccct 34633389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 1150039 - 1150089
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1150039 gtgtttatgcacggtgcataagggaataacttatgcaccataacttttgcc 1150089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9852320 - 9852273
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 48  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9852320 gtgtttatgcacggtgcataaggaaatgacttatgcaccataactttt 9852273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 34648144 - 34648191
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 48  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34648144 gtgtttatgcacggtgcataaggaaatgacttatgcaccataactttt 34648191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 19784321 - 19784271
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  19784321 gtgtttatgcacggtgcataaggaaatggcttatgcaccataacttttgcc 19784271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 30413964 - 30413914
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  30413964 gtgtttatgcacggtgcataaggaaatgacttatgcagcataacttttgcc 30413914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41451155 - 41451105
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  41451155 gtgtttatgcacggtgcataaggaaatggcttatgcaccataacttttgcc 41451105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15260867 - 15260917
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  15260867 gtgtttatgcacggtgcataaggaaaatccttatgcaccataacttttgcc 15260917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 23396527 - 23396484
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataac 44  Q
    |||||||||||||||||||||||||||  |||||||||||||||    
T  23396527 gtgtttatgcacggtgcataaggaaatggcttatgcaccataac 23396484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 2522917 - 2522867
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||| ||||||||||||||| |||||||||  ||||||||||||    
T  2522917 gtgtttatgcagggtgcataaggaaatgacttatgcataataacttttgcc 2522867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 7857730 - 7857680
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||| ||||||| ||||  ||||||||||||||||||||||    
T  7857730 gtgtttatgcacggcgcataagaaaatggcttatgcaccataacttttgcc 7857680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 40023279 - 40023325
Alignment:
Q  2 tgtttatgcacggtgcataaggaaataacttatgcaccataactttt 48  Q
    ||||||||||||||| ||||||||||  |||||||||||||||||||    
T  40023279 tgtttatgcacggtgtataaggaaatggcttatgcaccataactttt 40023325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 40012201 - 40012249
Alignment:
Q  4 tttatgcacggtgcataaggaaataacttatgcaccataacttttgccct 53  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  40012201 tttatgcatggtgcataaggaaatc-cttatgcaccataacttttgccct 40012249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 35302602 - 35302649
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 48  Q
    |||||||||||||||||||||| ||||  | |||||||||||||||||    
T  35302602 gtgtttatgcacggtgcataagaaaatgtcctatgcaccataactttt 35302649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 39022024 - 39021974
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccc 52  Q
    ||||||||||||||||||||||| | |  |||||||||||||||||||||||    
T  39022024 gtgtttatgcacggtgcataagg-atttccttatgcaccataacttttgccc 39021974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1208758 - 1208709
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||||||||    
T  1208758 gtgtttatgcacggtgcataagg-atttccttatgcaccataacttttgcc 1208709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 18022099 - 18022053
Alignment:
Q  5 ttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||| ||||||||||| ||  |||||||||||||||||||||||    
T  18022099 ttatgcagggtgcataagggaaggacttatgcaccataacttttgcc 18022053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 32987461 - 32987510
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||||||||    
T  32987461 gtgtttatgcacggtgcataagg-atttccttatgcaccataacttttgcc 32987510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40247301 - 40247347
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 47  Q
    ||||||||||| ||||||||||||||| |||||||||  ||||||||    
T  40247301 gtgtttatgcagggtgcataaggaaatgacttatgcataataacttt 40247347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 42433746 - 42433699
Alignment:
Q  5 ttatgcacggtgcataaggaaataacttatgcaccataacttttgccct 53  Q
    ||||||||||||||||||||  |  ||||||||||||||||||||||||    
T  42433746 ttatgcacggtgcataaggatttc-cttatgcaccataacttttgccct 42433699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 1536912 - 1536962
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1536912 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 1536962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 7089132 - 7089082
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7089132 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 7089082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6900853 - 6900807
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  6900853 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 6900807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 31216712 - 31216662
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31216712 gtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttgcc 31216662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30908702 - 30908655
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 48  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30908702 gtgtttatgcacggtgcataaggaaatgacttatgcaccataactttt 30908655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1449592 - 1449542
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  1449592 gtgtttatgcacggtgcataaggaaatggcttatgcaccataacttttgcc 1449542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15493224 - 15493174
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  15493224 gtgtttatgcacggtacataaggaaatggcttatgcaccataacttttgcc 15493174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 34870102 - 34870151
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgc 50  Q
    |||||||| || |||||||||||||||  |||||||||||||||||||||    
T  34870102 gtgtttatacatggtgcataaggaaatggcttatgcaccataacttttgc 34870151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33346387 - 33346438
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccct 53  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||||||||||    
T  33346387 gtgtttatgcacggtgcataagg-atttccttatgcaccataacttttgccct 33346438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35119284 - 35119237
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccct 53  Q
    ||||||||||||||||||||||||     ||||||||||||||||||||||||    
T  35119284 gtgtttatgcacggtgcataagga-----cttatgcaccataacttttgccct 35119237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 27079946 - 27079991
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataactt 46  Q
    |||||||||||||||||||||| |||| |||||||||  |||||||    
T  27079946 gtgtttatgcacggtgcataagaaaatgacttatgcataataactt 27079991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 32556393 - 32556344
Alignment:
Q  2 tgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||| |||||||||| |||| |||||||||  ||||||||||||    
T  32556393 tgtttatgcagggtgcataagaaaatgacttatgcataataacttttgcc 32556344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 13553033 - 13552983
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13553033 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 13552983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15416714 - 15416664
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15416714 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 15416664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 14394515 - 14394466
Alignment:
Q  4 tttatgcacggtgcataaggaaataacttatgcaccataacttttgccct 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14394515 tttatgcacggtgcataaggaaataacttatgcaccataacttttgccct 14394466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 3884051 - 3884102
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccc 52  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3884051 gtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttgccc 3884102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 30783485 - 30783434
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccc 52  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30783485 gtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttgccc 30783434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 14940372 - 14940418
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14940372 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 14940418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26637853 - 26637903
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||||||||    
T  26637853 gtgtttatgcacggtgcataagaaaatggcttatgcaccataacttttgcc 26637903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 16552655 - 16552707
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccct 53  Q
    ||||||||||| ||||||||||||||| |||||||||  ||||||||||||||    
T  16552655 gtgtttatgcatggtgcataaggaaatgacttatgcataataacttttgccct 16552707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 33868205 - 33868153
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgccct 53  Q
    ||||||||||| ||||||||||||||| |||||||||  ||||||||||||||    
T  33868205 gtgtttatgcagggtgcataaggaaatgacttatgcataataacttttgccct 33868153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37456730 - 37456680
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||| |||||||||||||||||  || |||||||||||||||||||    
T  37456730 gtgtttatgtacggtgcataaggaaatggctcatgcaccataacttttgcc 37456680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 28070169 - 28070218
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||||||||    
T  28070169 gtgtttatgcacggtgcataagg-atttccttatgcaccataacttttgcc 28070218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13362819 - 13362772
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttg 49  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||||||    
T  13362819 gtgtttatgcacggtgcataagg-atttccttatgcaccataacttttg 13362772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16668810 - 16668858
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttg 49  Q
    ||||||||||| |||||||||||||||  ||||||||  ||||||||||    
T  16668810 gtgtttatgcagggtgcataaggaaatgtcttatgcataataacttttg 16668858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25017233 - 25017280
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttg 49  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||||||    
T  25017233 gtgtttatgcacggtgcataagg-atttccttatgcaccataacttttg 25017280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 692 - 742
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  692 gtgtttatgcacggtgcataaggaaatggcttatgcaccataacttttgcc 742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33734 - 33684
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  33734 gtgtttatgcacggtgcataaggaaatggcttatgcaccataacttttgcc 33684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 8437 - 8487
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    |||||||||||| ||||||||||||||  ||||||||||||||||||||||    
T  8437 gtgtttatgcacagtgcataaggaaatggcttatgcaccataacttttgcc 8487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 24324 - 24274
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  24324 gtgtttatgcacggtacataaggaaatggcttatgcaccataacttttgcc 24274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1654 - 1604
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||| ||||||||||||||| |||||||||  |||| |||||||    
T  1654 gtgtttatgcagggtgcataaggaaatgacttatgcataataatttttgcc 1604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25248 - 25297
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||||||||    
T  25248 gtgtttatgcacggtgcataagg-atttccttatgcaccataacttttgcc 25297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 209376 - 209326
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||| |||||||||| |||| |||||||||  ||||||||||||    
T  209376 gtgtttatgcagggtgcataagaaaatgacttatgcataataacttttgcc 209326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 450252 - 450202
Alignment:
Q  1 gtgtttatgcacggtgcataaggaaataacttatgcaccataacttttgcc 51  Q
    ||||||||||| |||| |||||||||| |||||||||  ||||||||||||    
T  450252 gtgtttatgcaaggtgtataaggaaatgacttatgcataataacttttgcc 450202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0558
Description:

Target: scaffold0558; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 2492 - 2448
Alignment:
Q  5 ttatgcacggtgcataaggaaataacttatgcaccataacttttgc 50  Q
    |||||||||||||||||||||||  ||||| |||||||||||||||    
T  2492 ttatgcacggtgcataaggaaat-ccttatacaccataacttttgc 2448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 5904 - 5860
Alignment:
Q  5 ttatgcacggtgcataaggaaataacttatgcaccataacttttgc 50  Q
    |||||||||||||||||||||||  ||||| |||||||||||||||    
T  5904 ttatgcacggtgcataaggaaat-ccttatacaccataacttttgc 5860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University