View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8039_low_8 (Length: 416)
Name: NF8039_low_8
Description: NF8039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8039_low_8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 15 - 416
Target Start/End: Complemental strand, 52717043 - 52716642
Alignment:
| Q |
15 |
ataaatatcaccattaccattactttgaaaactatttgtgtaaccgtgttttggactcggcgctttactttgaaacatggcataaaaatcagtttggtta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52717043 |
ataaatatcaccattaccattactttgaaaactatttgtgtaaccgtgttttggactcggtgctttactttgaaacatggcataaaaatcagtttggtta |
52716944 |
T |
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| Q |
115 |
aaactagaacctcttggtgttggttctcttgatgattgaacagaatatatctcaacaccggttagatttgaagctcgtggcgtcatattatttaaatgag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52716943 |
aaactagaacctcttggtgttggttctcttgatgattgaacagaatatatctcaacaccggttagatttgaagctcgtggcgtcatattatttaaatgag |
52716844 |
T |
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| Q |
215 |
atttgttaaatgaaccagataccatagagttagtagttgatcttttaacaacaacatgaagtttaccatcttcacctatctctgcatcagtttgaagtgg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52716843 |
atttgttaaatgaaccagataccatagagttagtagttgatcttttaacaacaacatgaagtttaccatcttcacctatctctgcatcagtttgaagtgg |
52716744 |
T |
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| Q |
315 |
ttctctaccgttaagcgaaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtgtcaggaaactgttctgttataagaagtttagcagct |
414 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52716743 |
ttctctaccgttaagagaaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttctgttataagaagtttagcagct |
52716644 |
T |
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| Q |
415 |
ct |
416 |
Q |
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|| |
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| T |
52716643 |
ct |
52716642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 96 - 416
Target Start/End: Complemental strand, 52711654 - 52711334
Alignment:
| Q |
96 |
ataaaaatcagtttggttaaaactagaacctcttggtgttggttctcttgatgattgaacagaatatatctcaacaccggttagatttgaagctcgtggc |
195 |
Q |
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||||||||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||||||||||||||| || |||||||||||||| || |
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| T |
52711654 |
ataaaaatcagtttggttaaaaccagaagctctcggtgttggttctgttgatgtttgaaccgaatatatctcaacacctgtaagatttgaagctcgcagc |
52711555 |
T |
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| Q |
196 |
gtcatattatttaaatgagatttgttaaatgaaccagataccatagagttagtagttgatcttttaacaacaacatgaagtttaccatcttcacctatct |
295 |
Q |
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||||||||||||||||||||||||||||| || |||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
52711554 |
gtcatattatttaaatgagatttgttaaacgatccagatgcaatagagtttgtagttgatcttttaacaacaacgtgaagtttaccatcttcacctgtct |
52711455 |
T |
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| Q |
296 |
ctgcatcagtttgaagtggttctctaccgttaagcgaaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtgtcaggaaactgttctgt |
395 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
52711454 |
ctgcatcagtttgaagtgtttctctaccgttaagcgaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttctga |
52711355 |
T |
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| Q |
396 |
tataagaagtttagcagctct |
416 |
Q |
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| T |
52711354 |
aataagaagtttagcagctct |
52711334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 268 - 392
Target Start/End: Complemental strand, 34971296 - 34971172
Alignment:
| Q |
268 |
acatgaagtttaccatcttcacctatctctgcatcagtttgaagtggttctctaccgttaagcgaaacaacgtcagaatcaactttgaatgatgttatag |
367 |
Q |
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||||||||||||||||||||||| | || || |||||||||||||| ||| |||| | | |||| ||| ||||||||||||||||||||| | |||| |
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| T |
34971296 |
acatgaagtttaccatcttcaccaacttcagcttcagtttgaagtggctctttaccatccaaagaaagaacatcagaatcaactttgaatgatataatag |
34971197 |
T |
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| Q |
368 |
aagctgcagtgtcaggaaactgttc |
392 |
Q |
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|| | ||||| |||||||||||||| |
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| T |
34971196 |
aaccagcagtatcaggaaactgttc |
34971172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 34971477 - 34971405
Alignment:
| Q |
96 |
ataaaaatcagtttggttaaaactagaacctcttggtgttggttctcttgatgattgaacagaatatatctca |
168 |
Q |
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|||||||||||| || ||||||||||| ||||||||||| || | ||| || ||||||| |||||| |||||| |
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| T |
34971477 |
ataaaaatcagtatgattaaaactagaccctcttggtgtaggatttctagaagattgaagagaataaatctca |
34971405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 25039301 - 25039263
Alignment:
| Q |
96 |
ataaaaatcagtttggttaaaactagaacctcttggtgt |
134 |
Q |
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| T |
25039301 |
ataaaaatcagtatgattaaaactagaacctcttggtgt |
25039263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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