View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8039_low_9 (Length: 408)
Name: NF8039_low_9
Description: NF8039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8039_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 20 - 387
Target Start/End: Original strand, 10415546 - 10415913
Alignment:
| Q |
20 |
aatgagcctagctaagccaaagtctcccaagtgggctacaacatcatcgtcaagaagaatgttgctcgacttaacatcacagtgaactacggcttgctct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10415546 |
aatgagcctagctaagccaaagtctcccaagtgggctacaacgtcatcgtcaagaagaacgttgcttgacttaacatcacagtgaactacggcttgctct |
10415645 |
T |
|
| Q |
120 |
gtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctgagattatgaattccagacccttcgttatcgt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10415646 |
gtatcattgtgaagataatcaagtgcatgagctagatcaagagcgatgtctaacctttgtgccaggctgagattatgaattccagacccttcgttatcgt |
10415745 |
T |
|
| Q |
220 |
gcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagttaggatttt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10415746 |
gcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagttaggatttt |
10415845 |
T |
|
| Q |
320 |
gacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactctctgctactccac |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||| |
|
|
| T |
10415846 |
gacaagattacggtgcttcatctttcctaaagcattgcattcctccatgaaactctttgctgctccac |
10415913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 387
Target Start/End: Original strand, 10420433 - 10420800
Alignment:
| Q |
20 |
aatgagcctagctaagccaaagtctcccaagtgggctacaacatcatcgtcaagaagaatgttgctcgacttaacatcacagtgaactacggcttgctct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||| |||||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
10420433 |
aatgagcctagctaagccaaagtctcccaagtgagctacaatgtcatcgtccagaagaacgttgctcggcttaatatcacagtgaactatggcttgctct |
10420532 |
T |
|
| Q |
120 |
gtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctgagattatgaattccagacccttcgttatcgt |
219 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||||| ||||| | ||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10420533 |
gtaccattgtgaagataattaagtgcatgagctacatcaagagcaatgtcaaccctttgtctgaggctgagattatgaattccagacccttctttatcgt |
10420632 |
T |
|
| Q |
220 |
gcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagttaggatttt |
319 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| || |
|
|
| T |
10420633 |
gcagaagcttttctagactccccttaggcatgaactcaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaacaagttaggatctt |
10420732 |
T |
|
| Q |
320 |
gacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactctctgctactccac |
387 |
Q |
| |
|
|||||| || ||||| ||||||||||||| ||| | || ||| || ||||||||| |||| |||||| |
|
|
| T |
10420733 |
gacaaggtttcggtgtttcatctttcctagagcttcgcgttctgctttgaaactctttgctcctccac |
10420800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 24 - 375
Target Start/End: Original strand, 10409853 - 10410210
Alignment:
| Q |
24 |
agcctagctaagccaaagtctcccaagtgggctacaacatcatcgtcaagaagaatgttgctcgacttaacatcacagtgaactacggcttgctctgtat |
123 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| ||||| || ||||||| ||||| | ||||| ||| ||||| || ||||||||| || |
|
|
| T |
10409853 |
agcctagctaagccaaagtctcctaagtgagctacattgtcatcatcgagaagaacattgcttggtttaacgccactatgaaccaccacttgctctgcat |
10409952 |
T |
|
| Q |
124 |
cattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctgagattatgaattccagaccc---ttcgttat---c |
217 |
Q |
| |
|
|| ||||||||||||| | |||||||||||| | ||| | ||||||||||||||||||| ||||||| || ||| |||| | ||| |||| | |
|
|
| T |
10409953 |
caatgtgaagataatccaatgcatgagctacgttgagaacaatgtctaacctttgtgtgaaattgagattcagatttctagactcgtgttctttattacc |
10410052 |
T |
|
| Q |
218 |
gtgcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagttaggatt |
317 |
Q |
| |
|
|||| || ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10410053 |
atgcaaaaggttttccaaactcccattaggcatgaactcaaaaacaatagccttgaaatcttcacctttataatcaacacttgaacaacaagttaggatc |
10410152 |
T |
|
| Q |
318 |
ttgacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactct |
375 |
Q |
| |
|
|| |||||||| ||||||||||| ||||| | ||| ||||||||| ||| |||||||| |
|
|
| T |
10410153 |
ttaacaagattccggtgcttcatgtttcccagagctttgcattccaccacgaaactct |
10410210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 375
Target Start/End: Complemental strand, 35411004 - 35410649
Alignment:
| Q |
20 |
aatgagcctagctaagccaaagtctcccaagtgggctacaacatcatcgtcaagaagaatgttgctcgacttaacatcacagtgaactacggcttgctct |
119 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
35411004 |
aatgagcctagccaagccaaagtctcccaagtgggctacaaagtcatcgtcaagaagaacgttgctcggcttaagatcacagtgaactacagcttgctct |
35410905 |
T |
|
| Q |
120 |
gtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctgagattatgaattccagacccttcgttatcgt |
219 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| || |||||||||||||||| | |
|
|
| T |
35410904 |
gtctcattgtgaagataatcaagtgcatgagctacatcaagagcaatgtctaacctttgtgtgaggttgagattatgattttcagacccttcgttatcat |
35410805 |
T |
|
| Q |
220 |
gcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagttaggatttt |
319 |
Q |
| |
|
||| || |||||| ||| |||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35410804 |
gcaaaaacttttctagattcccattaggcattaactcaaaaacaatagccttgaactcttcaccattataatcaacacttgaacaacacgttaggatttt |
35410705 |
T |
|
| Q |
320 |
gacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactct |
375 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35410704 |
gacaagattacggtgcctcatctttcttaaagcattgcattccgccatgaaactct |
35410649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 387
Target Start/End: Complemental strand, 35386343 - 35385976
Alignment:
| Q |
20 |
aatgagcctagctaagccaaagtctcccaagtgggctacaacatcatcgtcaagaagaatgttgctcgacttaacatcacagtgaactacggcttgctct |
119 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
35386343 |
aatgatcctagccaagccaaagtctcccaagtgggctacaaagtcatcgtcaagaagaacgttgcttggcttaagatcacagtgaactacggcttgctct |
35386244 |
T |
|
| Q |
120 |
gtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctgagattatgaattccagacccttcgttatcgt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| || |||||||||| |||| || |
|
|
| T |
35386243 |
gtatcattgtgaagataatcaagtgcatgagctacatcaagagcaatgtctaacctttatgtgaggttgagattatgattttcagacccttcattattgt |
35386144 |
T |
|
| Q |
220 |
gcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagttaggatttt |
319 |
Q |
| |
|
||| || |||||| |||||| | || | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| || |
|
|
| T |
35386143 |
gcaaaaacttttcaagactctcatttgacatgaactcaaaaacaatagccttgaaatcttcacccttataatcaacacttgaacaacaggttaggacctt |
35386044 |
T |
|
| Q |
320 |
gacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactctctgctactccac |
387 |
Q |
| |
|
||||||||| |||||||||||||||| | |||||||||||| ||||||||||||| |||| |||||| |
|
|
| T |
35386043 |
gacaagattctggtgcttcatctttcccagagcattgcattctgccatgaaactctttgctgctccac |
35385976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 387
Target Start/End: Complemental strand, 35367191 - 35366824
Alignment:
| Q |
20 |
aatgagcctagctaagccaaagtctcccaagtgggctacaacatcatcgtcaagaagaatgttgctcgacttaacatcacagtgaactacggcttgctct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||| |||||||||||||| || || |||| |
|
|
| T |
35367191 |
aatgagcctagctaagccaaagtctcccaagtgggctacagtgtcatcgtccagaagaacgttgctcggcttaatatcacagtgaactatggatttctct |
35367092 |
T |
|
| Q |
120 |
gtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctgagattatgaattccagacccttcgttatcgt |
219 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||||||||||| ||||| | || ||| ||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
35367091 |
gtaccattgtgaagataatcgagtgcatgagctacatcaagagcaatgtcaactctgtgtctgaggctgagattatgatttccagacccttcgttatcat |
35366992 |
T |
|
| Q |
220 |
gcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagttaggatttt |
319 |
Q |
| |
|
|||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||| || |
|
|
| T |
35366991 |
gcagaagcttttctagacttcccttaggcatgaactcaaaaacaatagccttgaactcttcacccttataatcaatgcttgaacaacaagttaggatctt |
35366892 |
T |
|
| Q |
320 |
gacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactctctgctactccac |
387 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||| | ||||| || ||||||||| |||| |||||| |
|
|
| T |
35366891 |
gacaagatttcggtgcttcatctttcctagagcttcacattctgctttgaaactctttgctgctccac |
35366824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 373
Target Start/End: Complemental strand, 35755145 - 35754792
Alignment:
| Q |
20 |
aatgagcctagctaagccaaagtctcccaagtgggctacaacatcatcgtcaagaagaatgttgctcgacttaacatcacagtgaactacggcttgctct |
119 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| ||||| | ||||| |||||||||||||||| |||| ||| |
|
|
| T |
35755145 |
aatgagcctagctaggccaaagtctcccaagtgggctacaatttcatcatcaagaagaacattgcttggcttaatatcacagtgaactacgacttgttct |
35755046 |
T |
|
| Q |
120 |
gtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctgagattatgaattccagacccttcgttatcgt |
219 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||| |||||||| | |||| |||||||| ||||||| |
|
|
| T |
35755045 |
gtatcattgtgaagataatccaatgcatgagctacatcaagagcaatgtctaacctttgtgtgaggttgagattaaaatttcctgacccttcattatcgt |
35754946 |
T |
|
| Q |
220 |
gcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagttaggatttt |
319 |
Q |
| |
|
||| | |||||| |||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
35754945 |
gcaacaacttttcaagactcccatttgacatgaactcaaaaacaatagctttgaaatcttcaccattataatcaacacttgaacaacaagttaaaatctt |
35754846 |
T |
|
| Q |
320 |
gacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaact |
373 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
35754845 |
gacaagattccggtgcttcatctttcccaatgcattgcattccgctatgaaact |
35754792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 26 - 387
Target Start/End: Complemental strand, 35376737 - 35376370
Alignment:
| Q |
26 |
cctagctaagccaaagtctcccaagtgggctacaacatcatcgtcaagaagaatgttgctcgacttaacatcacagtgaactacggcttgctctgtatca |
125 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| | ||||| |||||||||| ||||| | |||||||||||| |||||||| |||||||||||||| |
|
|
| T |
35376737 |
cctagctaagccaaagtctcctaagtgggccacaccgtcatcatcaagaagaacattgcttggcttaacatcacaatgaactacaacttgctctgtatca |
35376638 |
T |
|
| Q |
126 |
ttgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctgagattatgaattccagaccc------ttcgttatcgt |
219 |
Q |
| |
|
|||||||||||||| | |||||||||||| || ||||| ||||||||||||||||||| ||||||| || ||| |||| | ||||||| | | |
|
|
| T |
35376637 |
ttgtgaagataatccaatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccat |
35376538 |
T |
|
| Q |
220 |
gcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagttaggatttt |
319 |
Q |
| |
|
||| | ||||||||| |||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35376537 |
gcaacaggttttccagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacaacaagttaggatttt |
35376438 |
T |
|
| Q |
320 |
gacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactctctgctactccac |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| |
|
|
| T |
35376437 |
gacaagattacggtgcttcatctttcctaaagcattgcattccgcaatgaaactctttgctgctccac |
35376370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 26 - 387
Target Start/End: Complemental strand, 35423996 - 35423629
Alignment:
| Q |
26 |
cctagctaagccaaagtctcccaagtgggctacaacatcatcgtcaagaagaatgttgctcgacttaacatcacagtgaactacggcttgctctgtatca |
125 |
Q |
| |
|
|||||||| |||||||||||| ||||||| ||| | ||||| |||||||||| ||||| | ||||||||||| |||||||| |||||||||||||| |
|
|
| T |
35423996 |
cctagctacgccaaagtctcctaagtgggtcacaccgtcatcatcaagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatca |
35423897 |
T |
|
| Q |
126 |
ttgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctgagattatgaattccagaccc------ttcgttatcgt |
219 |
Q |
| |
|
|||||||||||||| | |||||||||||| || ||||| ||||||||||||||||||| ||||||| || ||| |||| | ||||||| | | |
|
|
| T |
35423896 |
ttgtgaagataatccaatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccat |
35423797 |
T |
|
| Q |
220 |
gcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagttaggatttt |
319 |
Q |
| |
|
||| | ||||| ||| |||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35423796 |
gcaacaggttttctagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacagcaagttaggatttt |
35423697 |
T |
|
| Q |
320 |
gacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactctctgctactccac |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||| |
|
|
| T |
35423696 |
cacaagattacggtgcttcatctttcctaaagcattgcattccaccatgaaactctttgctgctccac |
35423629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 236 - 387
Target Start/End: Complemental strand, 35370362 - 35370208
Alignment:
| Q |
236 |
actccccttaggcatgaactcaaaaacaatagccttgaaa-tcttcaccattataatcaacacttgaacaacaagttaggattttgacaagattacggtg |
334 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
35370362 |
actcccattgggcatgaactcaaaaacaatagccttggaactcttcaccattataatcaacacttgagcaacacgttaggattttgacaagattacggtg |
35370263 |
T |
|
| Q |
335 |
cttcatctttcctaaagcattgc--attccgccatgaaactctctgctactccac |
387 |
Q |
| |
|
| ||||||||||||||||||||| ||||||| |||||||||| |||| |||||| |
|
|
| T |
35370262 |
cctcatctttcctaaagcattgcatattccgcaatgaaactctttgctgctccac |
35370208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 35437130 - 35437049
Alignment:
| Q |
234 |
agactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagttagga |
315 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||||||| |||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
35437130 |
agactccccataggcatgaattcaaaaactatagccttgaaaacttcaccattataatcaatacttgaacagaaagttagga |
35437049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 387
Target Start/End: Original strand, 29622987 - 29623354
Alignment:
| Q |
20 |
aatgagcctagctaagccaaagtctcccaagtgggctacaacatcatcgtcaagaagaatgttgctcgacttaacatcacagtgaactacggcttgctct |
119 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||| | ||||||||||||||||||||| ||||| ||| |
|
|
| T |
29622987 |
aatgagcctagctaatccaaagtctcccaagtgggctacaatgtcatcatcaagaagaacattgcttggcttaacatcacagtgaactacagcttgttct |
29623086 |
T |
|
| Q |
120 |
gtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctgagattatgaattccagacccttcgttatcgt |
219 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| ||||||| ||||| ||||||| |
|
|
| T |
29623087 |
atatcattgtgaagataatccaatgcatgagctacatcaagagcaatgtctatcctttgtgtgaggttgagattatggcttccagatccttcattatcgt |
29623186 |
T |
|
| Q |
220 |
gcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagttaggatttt |
319 |
Q |
| |
|
||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
29623187 |
gcaacatcttttctagactcatattaggcatgaactcaaaaacaatagccttgaaatcttcacctttataatcaacacttgaacaacaagttaggatctt |
29623286 |
T |
|
| Q |
320 |
gacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactctctgctactccac |
387 |
Q |
| |
|
||||||||| ||||| ||||||||||||| || || ||||| || |||||||||| |||| |||||| |
|
|
| T |
29623287 |
gacaagattccggtgtttcatctttcctagagatttacattctgcaatgaaactctttgctgctccac |
29623354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 36 - 375
Target Start/End: Complemental strand, 30663337 - 30662998
Alignment:
| Q |
36 |
ccaaagtctcccaagtgggctacaacatcatcgtcaagaagaatgttgctcgacttaacatcacagtgaactacggcttgctctgtatcattgtgaagat |
135 |
Q |
| |
|
||||||||||||||||||||||| | ||||| |||||||||| ||| | | || ||||||||||||||||| | | ||| ||| |||||||||||| |
|
|
| T |
30663337 |
ccaaagtctcccaagtgggctaccatgtcatcatcaagaagaacattgtttggtttcacatcacagtgaactacaacattctcagtaccattgtgaagat |
30663238 |
T |
|
| Q |
136 |
aatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctgagattatgaattccagacccttcgttatcgtgcagaatcttttccag |
235 |
Q |
| |
|
|||| | ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| || |
|
|
| T |
30663237 |
aatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgttatcgtgcagaagcttttctag |
30663138 |
T |
|
| Q |
236 |
actccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagttaggattttgacaagattacggtgc |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||||| || || || ||||||||||| |||||| |
|
|
| T |
30663137 |
actccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatctacgcttgaacaacatgtaagaatcttgacaagatttcggtgc |
30663038 |
T |
|
| Q |
336 |
ttcatctttcctaaagcattgcattccgccatgaaactct |
375 |
Q |
| |
|
||||||||||| ||||| |||||||| || ||||||||| |
|
|
| T |
30663037 |
ttcatctttcccaaagctttgcattcagctgtgaaactct |
30662998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 36 - 375
Target Start/End: Complemental strand, 30672017 - 30671678
Alignment:
| Q |
36 |
ccaaagtctcccaagtgggctacaacatcatcgtcaagaagaatgttgctcgacttaacatcacagtgaactacggcttgctctgtatcattgtgaagat |
135 |
Q |
| |
|
||||||||||||||||||||||| | ||||| |||||||||| ||| | | || ||||||||||||||||| | | ||| ||| |||||||||||| |
|
|
| T |
30672017 |
ccaaagtctcccaagtgggctaccatgtcatcatcaagaagaacattgtttggtttcacatcacagtgaactacaacattctcagtaccattgtgaagat |
30671918 |
T |
|
| Q |
136 |
aatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctgagattatgaattccagacccttcgttatcgtgcagaatcttttccag |
235 |
Q |
| |
|
|||| | ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| || |
|
|
| T |
30671917 |
aatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgttatcgtgcagaagcttttctag |
30671818 |
T |
|
| Q |
236 |
actccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagttaggattttgacaagattacggtgc |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||||| || || || ||||||||||| |||||| |
|
|
| T |
30671817 |
actccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatctacgcttgaacaacatgtaagaatcttgacaagatttcggtgc |
30671718 |
T |
|
| Q |
336 |
ttcatctttcctaaagcattgcattccgccatgaaactct |
375 |
Q |
| |
|
||||||||||| ||||| |||||||| || ||||||||| |
|
|
| T |
30671717 |
ttcatctttcccaaagctttgcattcagctgtgaaactct |
30671678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 36 - 375
Target Start/End: Complemental strand, 30626386 - 30626047
Alignment:
| Q |
36 |
ccaaagtctcccaagtgggctacaacatcatcgtcaagaagaatgttgctcgacttaacatcacagtgaactacggcttgctctgtatcattgtgaagat |
135 |
Q |
| |
|
||||||||||||||||||||||| | ||||| |||||||||| ||| | | || |||||||| |||||||| | | ||| ||| |||||||||||| |
|
|
| T |
30626386 |
ccaaagtctcccaagtgggctaccatgtcatcatcaagaagaacattgtttggtttcacatcacattgaactacaacattctcagtaccattgtgaagat |
30626287 |
T |
|
| Q |
136 |
aatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctgagattatgaattccagacccttcgttatcgtgcagaatcttttccag |
235 |
Q |
| |
|
|||| | ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| || |
|
|
| T |
30626286 |
aatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgttatcgtgcagaagcttttctag |
30626187 |
T |
|
| Q |
236 |
actccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagttaggattttgacaagattacggtgc |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| | ||||||||||| || || || ||||||||||| |||||| |
|
|
| T |
30626186 |
actccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatctattcttgaacaacatgtaagaatcttgacaagatttcggtgc |
30626087 |
T |
|
| Q |
336 |
ttcatctttcctaaagcattgcattccgccatgaaactct |
375 |
Q |
| |
|
||||||||||| ||||| |||||||| || ||||||||| |
|
|
| T |
30626086 |
ttcatctttcccaaagctttgcattcagctgtgaaactct |
30626047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 41 - 310
Target Start/End: Complemental strand, 1154056 - 1153787
Alignment:
| Q |
41 |
gtctcccaagtgggctacaacatcatcgtcaagaagaatgttgctcgacttaacatcacagtgaactacggcttgctctgtatcattgtgaagataatca |
140 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||| ||||| | ||||| ||||||||||||| |||||| |||||||||||||||| ||||| |
|
|
| T |
1154056 |
gtctcccaagtgggctacattgtcatcatcaagaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatca |
1153957 |
T |
|
| Q |
141 |
agtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctgagattatgaattccagacccttcgttatcgtgcagaatcttttccagactcc |
240 |
Q |
| |
|
||||||||||||| ||||||||| | |||| ||||| |||||| ||||||| ||| || |||||||||| |||| |||| |||||||| ||||||| |
|
|
| T |
1153956 |
agtgcatgagctatatcaagagcaaaatctaccctttttgtgagcttgagattgtgattttcagacccttcaatatcatgcaacatcttttctagactcc |
1153857 |
T |
|
| Q |
241 |
ccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagt |
310 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| || |||||| |||||| |||||||| |
|
|
| T |
1153856 |
cgttaggcatgaactcaaaaacaatagccttgaaatcttcacctttgcaatcaatacttgagcaacaagt |
1153787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 74 - 375
Target Start/End: Complemental strand, 13564895 - 13564606
Alignment:
| Q |
74 |
aagaatgttgctcgacttaacatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaac |
173 |
Q |
| |
|
||||| |||||||| |||||||||||| ||| ||| |||||||||| |||||||||||||||||| | ||||| ||||| |||| | | |
|
|
| T |
13564895 |
aagaacgttgctcggcttaacatcacaatgacctaaggcttgctctacatcattgtgaagataatccaatgcataagcta------------tgtccacc |
13564808 |
T |
|
| Q |
174 |
ctttgtgtgaggctgagattatgaattccagacccttcgttatcgtgcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttga |
273 |
Q |
| |
|
||||| | | |||||||| |||| || ||| |||||||||| ||||| |||||||| ||||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
13564807 |
ctttgagaaaagctgagataatgattttcagttccttcgttattgtgcaacatcttttctagactaccattagacatgaactcaaaaacaatagccttga |
13564708 |
T |
|
| Q |
274 |
aatcttcaccattataatcaacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaact |
373 |
Q |
| |
|
|||| ||||| |||| ||||| ||||||||| ||| || || || ||| |||| ||||||||||||||||||||||| |||||||| ||| | ||||| |
|
|
| T |
13564707 |
aatcgtcacccttattatcaatacttgaacattaaggaagaatcttaacacgatttcggtgcttcatctttcctaaagctttgcattcagccgtaaaact |
13564608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 15294080 - 15294046
Alignment:
| Q |
20 |
aatgagcctagctaagccaaagtctcccaagtggg |
54 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
15294080 |
aatgagcctagccaagccaaagtctcccaagtggg |
15294046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 15474449 - 15474415
Alignment:
| Q |
20 |
aatgagcctagctaagccaaagtctcccaagtggg |
54 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
15474449 |
aatgagcctagccaagccaaagtctcccaagtggg |
15474415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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