View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8040_high_3 (Length: 348)
Name: NF8040_high_3
Description: NF8040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8040_high_3 |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (5 HSPs) |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 348
Target Start/End: Complemental strand, 3648901 - 3648561
Alignment:
| Q |
10 |
aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctccttg |
109 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3648901 |
aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacactccttg |
3648802 |
T |
|
| Q |
110 |
acacnnnnnnnnnt--gtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacgaaattatcctgtaaaata |
207 |
Q |
| |
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||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3648801 |
acaaaaaaaacaatatgtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacgaaattatcctgtaaaata |
3648702 |
T |
|
| Q |
208 |
tactataaattagacattttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaa |
307 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3648701 |
tactataaattagacatgttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaa |
3648602 |
T |
|
| Q |
308 |
tggctcaaaaaatcacttatgtttctgatacttccccttcg |
348 |
Q |
| |
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||||||||||||||| |||||||||||||| |||||||||| |
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|
| T |
3648601 |
tggctcaaaaaatcaattatgtttctgatatttccccttcg |
3648561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 10 - 348
Target Start/End: Complemental strand, 30321421 - 30321084
Alignment:
| Q |
10 |
aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctccttg |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30321421 |
aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctgcttc |
30321322 |
T |
|
| Q |
110 |
acacnnnnnnnnntgtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacgaaattatcctgtaaaatata |
209 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30321321 |
aca-aaaaaaaaatgtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacgaaattatcctgtaaaatata |
30321223 |
T |
|
| Q |
210 |
ctataaattagacattttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaatg |
309 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30321222 |
ctataaattagacatcttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaatg |
30321123 |
T |
|
| Q |
310 |
gctcaaaaaatcacttatgtttctgatacttccccttcg |
348 |
Q |
| |
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| ||||||||||| |||||||||||||| |||||||||| |
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|
| T |
30321122 |
gttcaaaaaatcaattatgtttctgatatttccccttcg |
30321084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 348
Target Start/End: Original strand, 25335413 - 25335751
Alignment:
| Q |
10 |
aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctccttg |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25335413 |
aagaatatcaaaaatatgatttcagttaattgtatgcaacgaatttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctccttg |
25335512 |
T |
|
| Q |
110 |
acacnnnnnnnnntgtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacgaaattatcctgtaaaatata |
209 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
25335513 |
aaaaaaaaaaatatgtattacttaatgactaagatataaatttaaatatgaattgtcgagtttaatgtgaatattttacgaaattatcctgtaaaatata |
25335612 |
T |
|
| Q |
210 |
ctataaattagacattttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaatg |
309 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25335613 |
ctataaattagacatgttggctaacactttcttcacatcataatttcaattctccatttttctttctttcgattttgtatctctctttacacttcaaatg |
25335712 |
T |
|
| Q |
310 |
gctcaaaaaatcacttatgtttctgatacttccccttcg |
348 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||||||| |
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| T |
25335713 |
gctcaaaaaatcaattatgtttatgatatttccccttcg |
25335751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 2197632 - 2197693
Alignment:
| Q |
10 |
aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaa |
72 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| |
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|
| T |
2197632 |
aagaatatcaaaaatatgatttcagttgattgtatttaa-ggacttgctaaaataaacgttaa |
2197693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 15651898 - 15651966
Alignment:
| Q |
181 |
tattttacgaaattatcctgtaaaatatactataaattagacattttggctaacactttcttcacatca |
249 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| | ||||||| | ||||||||||||| |
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|
| T |
15651898 |
tattttacgaaattatcctttaaaatatactataaattagacctattggctagccgtttcttcacatca |
15651966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 24200094 - 24200051
Alignment:
| Q |
18 |
caaaaatatgatttcagttaattgtatttaacggacttgctaaa |
61 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
24200094 |
caaaaatatgatttcagttgattgtatttaacggacttgctaaa |
24200051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 12578180 - 12578220
Alignment:
| Q |
181 |
tattttacgaaattatcctgtaaaatatactataaattaga |
221 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12578180 |
tattttacgaaattatcctgtaaaatataatataaattaga |
12578220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 348
Target Start/End: Complemental strand, 2346591 - 2346254
Alignment:
| Q |
10 |
aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctccttg |
109 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2346591 |
aagaatatcaaaaatatgatttcaattgattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctcattg |
2346492 |
T |
|
| Q |
110 |
acacnnnnnnnnntgtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacgaaattatcctgtaaaatata |
209 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
2346491 |
aaa-aaaaaaatatgtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacaaaattatcctataaaatata |
2346393 |
T |
|
| Q |
210 |
ctataaattagacattttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaatg |
309 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2346392 |
ttataaattagacatgttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaatg |
2346293 |
T |
|
| Q |
310 |
gctcaaaaaatcacttatgtttctgatacttccccttcg |
348 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||||||||| |
|
|
| T |
2346292 |
gctcaaaaaatcaattatgtttctcatatctccccttcg |
2346254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 6301186 - 6301247
Alignment:
| Q |
10 |
aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaa |
72 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| |||| |
|
|
| T |
6301186 |
aagaatatcaaaaatatgatttcagttgattgtacttaa-ggacttgctaaaataaactttaa |
6301247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 6301269 - 6301314
Alignment:
| Q |
62 |
ataaaccttaagtcatgggctgattgaaaaagttaattacgctcct |
107 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||| |||||| |
|
|
| T |
6301269 |
ataaaccttaaatcatgggctgattgaaaaagtttattatgctcct |
6301314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 2347409 - 2347364
Alignment:
| Q |
201 |
taaaatatactataaattagacattttggctaacactttcttcaca |
246 |
Q |
| |
|
|||||| || |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
2347409 |
taaaatctattataaattagacatattggccaacactttcttcaca |
2347364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 612181 - 612249
Alignment:
| Q |
181 |
tattttacgaaattatcctgtaaaatatactataaattagacattttggctaacactttcttcacatca |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||| || ||||||||||||| |
|
|
| T |
612181 |
tattttacgaaattatcctgtaaaatatactataaattagacctattggctagcagtttcttcacatca |
612249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 22642 - 22581
Alignment:
| Q |
10 |
aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaa |
72 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| |
|
|
| T |
22642 |
aagaatatcaaaaatatgatttcagttgattgtatttaa-ggacttgctaaaataaacgttaa |
22581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 11307443 - 11307504
Alignment:
| Q |
10 |
aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaa |
72 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| |
|
|
| T |
11307443 |
aagaatatcaaaaatatgatttcagttgattgtatttaa-ggacttgctaaaataaacgttaa |
11307504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 11307960 - 11308000
Alignment:
| Q |
181 |
tattttacgaaattatcctgtaaaatatactataaattaga |
221 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||| ||||| |
|
|
| T |
11307960 |
tattttaccaaattatcctgtaaaaaatactataagttaga |
11308000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 14786601 - 14786563
Alignment:
| Q |
181 |
tattttacgaaattatcctgtaaaatatactataaatta |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14786601 |
tattttacgaaattatcctgtaaaatataatataaatta |
14786563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 35136302 - 35136379
Alignment:
| Q |
181 |
tattttacgaaattatcctgtaaaatatactataaattagacattttggctaacactttcttcacatcagaatttcaa |
258 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||||||||||| || |||| || || ||| ||||||||| || ||||| |
|
|
| T |
35136302 |
tattttacgaaattatcctgaaaaatctgctataaattagatatgttggttagcagtttattcacatcacaacttcaa |
35136379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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