View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8040_low_1 (Length: 802)

Name: NF8040_low_1
Description: NF8040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8040_low_1
NF8040_low_1
[»] chr4 (16 HSPs)
chr4 (12-572)||(18360956-18361510)
chr4 (12-572)||(36601417-36601973)
chr4 (653-783)||(18360728-18360858)
chr4 (653-783)||(36602071-36602201)
chr4 (311-568)||(36635825-36636080)
chr4 (209-428)||(36642382-36642602)
chr4 (217-555)||(35969276-35969610)
chr4 (311-428)||(36630394-36630511)
chr4 (311-426)||(36664757-36664872)
chr4 (311-449)||(36627101-36627239)
chr4 (315-403)||(18365324-18365412)
chr4 (315-403)||(36597512-36597601)
chr4 (311-426)||(18084140-18084252)
chr4 (205-413)||(36910648-36910861)
chr4 (473-561)||(28125762-28125847)
chr4 (89-135)||(36630696-36630742)
[»] chr1 (1 HSPs)
chr1 (222-425)||(42601686-42601890)
[»] chr8 (1 HSPs)
chr8 (311-427)||(35336841-35336957)
[»] chr6 (3 HSPs)
chr6 (311-425)||(33839176-33839290)
chr6 (311-425)||(33843092-33843206)
chr6 (486-554)||(33839361-33839426)
[»] chr5 (4 HSPs)
chr5 (466-569)||(19657374-19657474)
chr5 (466-569)||(19674218-19674318)
chr5 (311-360)||(19657227-19657276)
chr5 (311-360)||(19674071-19674120)


Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 12 - 572
Target Start/End: Complemental strand, 18361510 - 18360956
Alignment:
Q  12 tgagatgaagatcgagaggtgcggcagaggcaggcgcagcggtagaagcaagtgcggagaactgcgaaagataataattgataatatttgcaccctttat 111  Q
    |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  18361510 tgagatgaagatcgggaggtgtggaagaggcaggcgcagcggtagaagcaagtgcggagaactgcgaaagataat---tgataatatttgcaccctttat 18361414  T
Q  112 agattcctcaacctgtttagtaataataaccaatcacaaattcttatggtcgtttcattaaattagctaagctgagattcgagnnnnnnnnnnttaacac 211  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||          |||||||    
T  18361413 agattcctcaacctgtttagtaataa---ccaatcacaaattcttatggttgtttcattaaattagctaagctgagattcgagaaaaaaaaa-ttaacac 18361318  T
Q  212 actcagctcccttatggttttcaaataactacttgcttaagattaaaccaattcgaataatctgttaagatgttaacttcggccgtcggtgannnnnnn- 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||            
T  18361317 actcagctcccttatggttttcaaataactacttgcttaagattaaatcaattcgaataatctgttaagatgttaactttggccgtcggtgaattttttt 18361218  T
Q  311 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaac 410  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18361217 gcaagaagtcaactattccatcaggtatgggagatggtttcaaacttgcttcaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaac 18361118  T
Q  411 tttctttaacatggcatcgctcactatgttgggtaatcccattggatactaggtagttccagttttatttctgtagacttcaagttacacaaagaagata 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18361117 tttctttaacatggcatcgctcactatgttgggtaatcccattggatgctaggtagttccagttttatttctgtagacttcaagttacacaaagaagata 18361018  T
Q  511 gcttaataacctctagtaaataaggaactaaggagagtatctaaagaatgaggaatgagagt 572  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18361017 gcttaataacctctagtaaataaggaactaaggagagtatctaaagaatgaggattgagagt 18360956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 12 - 572
Target Start/End: Original strand, 36601417 - 36601973
Alignment:
Q  12 tgagatgaagatcgagaggtgcggcagaggcaggcgcagcggtagaagcaagtgcggagaactgcgaaagataataattgataatatttgcaccctttat 111  Q
    |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  36601417 tgagatgaagatcgggaggtgtggaagaggcaggcgcagcggtagaagcaagtgcggagaactgcgaaagataat---tgataatatttgcaccctttat 36601513  T
Q  112 agattcctcaacctgtttagtaataataaccaatcacaaattcttatggtcgtttcattaaattagctaagctgagattcgagnnnnnnnnnnttaacac 211  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||          | |||||    
T  36601514 agattcctcaacctgtttagtaataa---ccaatcacaaattcttatggttgtttcattaaattagctaagctgagattcgagaaaaaaaaattaaacac 36601610  T
Q  212 actcagctcccttatggttttcaaataactacttgcttaagattaaaccaattcgaataatctgttaagatgttaacttcggccgtcggtgannnnnnn- 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||            
T  36601611 actcagctcccttatggttttcaaataactacttgcttaagattaaatcaattcgaataatctgttaagatgttaactttggccgtcggtgaattttttt 36601710  T
Q  311 -gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaa 409  Q
     ||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36601711 tgcaagaagtcaactattccatcaggtatgggagatggtttcaaacttgcttcaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaa 36601810  T
Q  410 ctttctttaacatggcatcgctcactatgttgggtaatcccattggatactaggtagttccagttttatttctgtagacttcaagttacacaaagaagat 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36601811 ctttctttaacatggcatcgctcactatgttgggtaatcccattggatgctaggtagttccagttttatttctgtagacttcaagttacacaaagaagat 36601910  T
Q  510 agcttaataacctctagtaaataaggaactaaggagagtatctaaagaatgaggaatgagagt 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36601911 agcttaataacctctagtaaataaggaactaaggagagtatctaaagaatgaggattgagagt 36601973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 653 - 783
Target Start/End: Complemental strand, 18360858 - 18360728
Alignment:
Q  653 ctggcaaagcagagagtagttgaagagattgtcgatgattttacatttgcaaggtctagctgcctgttgaatttatgtcatcttgaaatcatttatgtat 752  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18360858 ctggcaaagcagagagtagttgaagagattgtcgatcattttacatttgcaaggtctagctgcctgttgaatttatgtcatcttgaaatcatttatgtat 18360759  T
Q  753 tgatatttacttgtttaacaacagaacgaaa 783  Q
    |||||||||||||||||||||||||||||||    
T  18360758 tgatatttacttgtttaacaacagaacgaaa 18360728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 653 - 783
Target Start/End: Original strand, 36602071 - 36602201
Alignment:
Q  653 ctggcaaagcagagagtagttgaagagattgtcgatgattttacatttgcaaggtctagctgcctgttgaatttatgtcatcttgaaatcatttatgtat 752  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36602071 ctggcaaagcagagagtagttgaagagattgtcgatcattttacatttgcaaggtctagctgcctgttgaatttatgtcatcttgaaatcatttatgtat 36602170  T
Q  753 tgatatttacttgtttaacaacagaacgaaa 783  Q
    |||||||||||||||||||||||||||||||    
T  36602171 tgatatttacttgtttaacaacagaacgaaa 36602201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 311 - 568
Target Start/End: Original strand, 36635825 - 36636080
Alignment:
Q  311 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaac 410  Q
    ||||||| |||||||||||||||||||||||||||||||  |||| ||||||||| ||||||| |||||| ||||||||||||||||||||||||||| |    
T  36635825 gcaagaattcaactattccatcaggtatgggaggtggttccaaacgtgctttaaaagcctttcttaacttggcagcttctttacgtgacttggcagcagc 36635924  T
Q  411 tttctttaacatggcatcgctcactatgttgggtaatcccattgga-tactaggtagttccagttttatttctgtagacttcaagttacacaaagaagat 509  Q
    ||||||||||||||| ||  |||| | |||||||||| ||||| || |||||     |||||||||||||||  ||||||||||||||||||||||||      
T  36635925 tttctttaacatggcttctttcaccaggttgggtaatgccatttgattactacaggtttccagttttatttccatagacttcaagttacacaaagaaggc 36636024  T
Q  510 agcttaataacctctagtaaataaggaactaaggagagtatctaaagaatgaggaatga 568  Q
    ||||   ||||||||||||||| ||||||||| ||||| ||||||| ||| ||||||||    
T  36636025 agct---taacctctagtaaatcaggaactaatgagagaatctaaacaattaggaatga 36636080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 209 - 428
Target Start/End: Original strand, 36642382 - 36642602
Alignment:
Q  209 cacactcagctcccttatggttttcaaataactacttgcttaagattaaaccaattcgaataatctgttaagatgttaacttcggccgtcggtgannnnn 308  Q
    |||||||||||||||||||| ||| ||||||| || |||||||||||||| |||| ||| |||||||| |||||||||||||| || | ||||||         
T  36642382 cacactcagctcccttatggattttaaataacaacctgcttaagattaaaacaatccgagtaatctgtaaagatgttaacttccgcagacggtgagtttt 36642481  T
Q  309 nn-gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagc 407  Q
       |||||||||| |||||||||| |||||||| ||||||||  ||||  |||||||||| ||||| |||||||||| ||||||||| |||| |||||||    
T  36642482 gtcgcaagaagtctactattccattaggtatggcaggtggttccaaacgagctttaaatgtctttcttaacttagcaacttctttacttgacatggcagc 36642581  T
Q  408 aactttctttaacatggcatc 428  Q
    | |||||||||||| ||||||    
T  36642582 atctttctttaacaaggcatc 36642602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 217 - 555
Target Start/End: Complemental strand, 35969610 - 35969276
Alignment:
Q  217 gctcccttatggttttcaaataactacttgcttaagattaaaccaattcgaataatctgttaagatgttaacttcggccgtcggtgannnnnnn-gcaag 315  Q
    |||| |||||||||||||||||||||| | |||||||||||| ||||| || |||  ||||| |||||||||||| |||  ||||||        |||||    
T  35969610 gctcacttatggttttcaaataactacctccttaagattaaaacaatttgagtaaattgttaggatgttaacttccgccagcggtgagttttgtcgcaag 35969511  T
Q  316 aagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaactttct 415  Q
    || |||||||||||||| ||||||||||| ||||  |||| |||||||||||| |||  |||||| | |||||||||||  |||||||||||||||||||    
T  35969510 aaatcaactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttactcgacttggcagcaactttct 35969411  T
Q  416 ttaacatggcatcgctcactatgttgggtaatccca-ttggatactaggtagttccagttttatttctgtagacttcaagttacacaaagaagatagctt 514  Q
    ||||||||||||   |||||| |  ||||||||||| |||  |   | |  |||||| |||||||||  | |||||||||||||||||||||   ||||     
T  35969410 ttaacatggcat---tcactacgcggggtaatcccagttgagtttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagct- 35969315  T
Q  515 aataacctctagtaaataaggaactaaggagagtatctaaa 555  Q
       |||||||| || || ||||||||||||||| |||||||    
T  35969314 --caacctctaatatatcaggaactaaggagagaatctaaa 35969276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 311 - 428
Target Start/End: Complemental strand, 36630511 - 36630394
Alignment:
Q  311 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaac 410  Q
    |||||||||||||||||||||||||||||| ||||  ||  |||| ||||||||| ||||||| ||||||| | |||||||||| |||||| ||||||||    
T  36630511 gcaagaagtcaactattccatcaggtatggcaggtaattctaaacctgctttaaacgcctttcttaacttatcggcttctttacttgacttagcagcaac 36630412  T
Q  411 tttctttaacatggcatc 428  Q
    ||||||||||||| ||||    
T  36630411 tttctttaacatgacatc 36630394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 311 - 426
Target Start/End: Original strand, 36664757 - 36664872
Alignment:
Q  311 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaac 410  Q
    ||||||||||||| || || |||||||||| | ||||||  |||| |||||| |||||||||| |||||||||| |||||||||| |||||||||||| |    
T  36664757 gcaagaagtcaaccataccgtcaggtatggcacgtggttccaaacgtgctttgaatgcctttcttaacttagcaacttctttacgagacttggcagcagc 36664856  T
Q  411 tttctttaacatggca 426  Q
    ||||||||||||||||    
T  36664857 tttctttaacatggca 36664872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 311 - 449
Target Start/End: Original strand, 36627101 - 36627239
Alignment:
Q  311 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaac 410  Q
    |||||||||  ||||||||||||||||||| |||||||||  ||| |||||||||||| |||| || ||| |||||||||||||||||  |||||  | |    
T  36627101 gcaagaagttgactattccatcaggtatggaaggtggtttccaacctgctttaaatgcttttcgtacctttgcagcttctttacgtgatgtggcaatagc 36627200  T
Q  411 tttctttaacatggcatcgctcactatgttgggtaatcc 449  Q
    | ||||||||||||||||  ||| ||||  |||||||||    
T  36627201 tctctttaacatggcatctttcaatatgaagggtaatcc 36627239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 315 - 403
Target Start/End: Complemental strand, 18365412 - 18365324
Alignment:
Q  315 gaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttgg 403  Q
    |||||||||||||||||||||||||||||||||||  ||||  || |||||||||||   ||||||||||||||||| | |||||||||    
T  18365412 gaagtcaactattccatcaggtatgggaggtggttgcaaaccagcattaaatgccttgtttaacttagcagcttcttcaggtgacttgg 18365324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 315 - 403
Target Start/End: Original strand, 36597512 - 36597601
Alignment:
Q  315 gaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaac-ttagcagcttctttacgtgacttgg 403  Q
    |||||||||||||||||||||||||||||||||||  ||||  || |||||||||||   |||| ||||||||||||| | |||||||||    
T  36597512 gaagtcaactattccatcaggtatgggaggtggttgcaaaccagcattaaatgccttgtttaactttagcagcttcttcaggtgacttgg 36597601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 311 - 426
Target Start/End: Complemental strand, 18084252 - 18084140
Alignment:
Q  311 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaac 410  Q
    ||||||||||||| || || |||||||||| | ||||||  |||| |||||| |||||||||| |||||||||| | |||||||| ||| ||||||| |     
T  18084252 gcaagaagtcaaccataccgtcaggtatggcacgtggttccaaacgtgctttgaatgcctttcttaacttagcaac-tctttacgagac-tggcagc-ag 18084156  T
Q  411 tttctttaacatggca 426  Q
     |||||||||||||||    
T  18084155 nttctttaacatggca 18084140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 205 - 413
Target Start/End: Complemental strand, 36910861 - 36910648
Alignment:
Q  205 ttaacacactcagctcccttatggttttcaaataacta----cttgcttaagattaaaccaattcgaataatctgttaagatgttaacttcggccgtcgg 300  Q
    |||||||||||||||||| ||||||||| |||||||||    | ||||||||||||||  || |  | |||||||||  |||||||||||| || |  ||    
T  36910861 ttaacacactcagctcccatatggtttttaaataactagctacctgcttaagattaaaataaataaagtaatctgttgtgatgttaacttccgctgaggg 36910762  T
Q  301 tgannnnnnn-gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgac 399  Q
     ||        |||||||||||||||||||||||||||||| |||| |||  | || |  |||||||||||| | |||||||  |  ||||| | |||||    
T  36910761 cgagttttgtcgcaagaagtcaactattccatcaggtatggcaggtagttccatacgtcttttaaatgccttgcataacttaagaagttcttcatgtgac 36910662  T
Q  400 ttggcagcaacttt 413  Q
    ||||||||| ||||    
T  36910661 ttggcagcagcttt 36910648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 473 - 561
Target Start/End: Complemental strand, 28125847 - 28125762
Alignment:
Q  473 ttttatttctgtagacttcaagttacacaaagaagatagcttaataacctctagtaaataaggaactaaggagagtatctaaagaatga 561  Q
    |||||||||  | |||||||||| ||||||||||   |||||||   |||||||||||| ||||||||||||||| ||||||| |||||    
T  28125847 ttttatttccatcgacttcaagtaacacaaagaacggagcttaa---cctctagtaaatcaggaactaaggagagaatctaaacaatga 28125762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 36630742 - 36630696
Alignment:
Q  89 ttgataatatttgcaccctttatagattcctcaacctgtttagtaat 135  Q
    |||||||| ||  |||||||||||||||| |||||||||||||||||    
T  36630742 ttgataatcttctcaccctttatagattcttcaacctgtttagtaat 36630696  T

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Target: chr1 (Bit Score: 88; Significance: 7e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 222 - 425
Target Start/End: Original strand, 42601686 - 42601890
Alignment:
Q  222 cttatggttttcaaataactacttgcttaagattaaaccaattcgaataatctgttaagatgttaacttcggccgtcggtgannnnnnn-gcaagaagtc 320  Q
    ||||||||||| |||||||||| |||||||||| |||  || |||  |||||||||||||| ||||||||  ||| |||  |        ||||||| ||    
T  42601686 cttatggtttttaaataactacctgcttaagatcaaaagaactcgggtaatctgttaagattttaacttccaccgacggcaagttttgtcgcaagaaatc 42601785  T
Q  321 aactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaactttctttaac 420  Q
    |||||||||||| ||||||||||||||||| ||||  ||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  42601786 aactattccatcgggtatgggaggtggttttaaacccgctttaaattcctttcttaacttagcagcttctttacgtgacttggcagcagctttctttaac 42601885  T
Q  421 atggc 425  Q
    |||||    
T  42601886 atggc 42601890  T

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Target: chr8 (Bit Score: 73; Significance: 6e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 311 - 427
Target Start/End: Complemental strand, 35336957 - 35336841
Alignment:
Q  311 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaac 410  Q
    |||||||||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||| |||||| |||||||| ||||  |||||||||||  |    
T  35336957 gcaagaagtcaactattccatcaggtatgggaggtggtctcaaacctgctttaaatgtctttcttaactttgcagcttcattacaggacttggcagccgc 35336858  T
Q  411 tttctttaacatggcat 427  Q
    |||||||||||||||||    
T  35336857 tttctttaacatggcat 35336841  T

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Target: chr6 (Bit Score: 63; Significance: 6e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 311 - 425
Target Start/End: Original strand, 33839176 - 33839290
Alignment:
Q  311 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaac 410  Q
    |||||||||| ||||||||||||||||||| ||||||||  ||||  ||||||||||| |||| |||||| | ||||||||| |||||||| |||||| |    
T  33839176 gcaagaagtccactattccatcaggtatggaaggtggttctaaacccgctttaaatgcttttcgtaacttggaagcttctttgcgtgactttgcagcagc 33839275  T
Q  411 tttctttaacatggc 425  Q
    |||||||||||||||    
T  33839276 tttctttaacatggc 33839290  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 311 - 425
Target Start/End: Original strand, 33843092 - 33843206
Alignment:
Q  311 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaac 410  Q
    |||||||||| |||||||||||||||| || |||||||   ||||  ||||||||||| |||| || ||| | ||||||||| ||||||||||||||| |    
T  33843092 gcaagaagtccactattccatcaggtacggaaggtggtcgcaaacccgctttaaatgcttttcgtagcttggaagcttctttgcgtgacttggcagcagc 33843191  T
Q  411 tttctttaacatggc 425  Q
    |||||||||||||||    
T  33843192 tttctttaacatggc 33843206  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 33839361 - 33839426
Alignment:
Q  486 gacttcaagttacacaaagaagatagcttaataacctctagtaaataaggaactaaggagagtatctaa 554  Q
    ||||||||||||||||||||||  ||||   ||||||| | ||||| ||||||||||||||| ||||||    
T  33839361 gacttcaagttacacaaagaaggaagct---taacctccaataaatcaggaactaaggagagaatctaa 33839426  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 466 - 569
Target Start/End: Original strand, 19657374 - 19657474
Alignment:
Q  466 gttccagttttatttctgtagacttcaagttacacaaagaagatagcttaataacctctagtaaataaggaactaaggagagtatctaaagaatgaggaa 565  Q
    ||||||||||||||||  ||||||| ||||| ||||||||||  ||||   ||| ||||| ||| | ||||||||||||||| ||||||  |||||||||    
T  19657374 gttccagttttatttccatagactttaagttgcacaaagaagggagct---taagctctaataattcaggaactaaggagagaatctaagaaatgaggaa 19657470  T
Q  566 tgag 569  Q
    ||||    
T  19657471 tgag 19657474  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 466 - 569
Target Start/End: Original strand, 19674218 - 19674318
Alignment:
Q  466 gttccagttttatttctgtagacttcaagttacacaaagaagatagcttaataacctctagtaaataaggaactaaggagagtatctaaagaatgaggaa 565  Q
    ||||||||||||||||  ||||||| ||||| ||||||||||  ||||   ||| ||||| ||| | ||||||||||||||| ||||||  |||||||||    
T  19674218 gttccagttttatttccatagactttaagttgcacaaagaagggagct---taagctctaataattcaggaactaaggagagaatctaagaaatgaggaa 19674314  T
Q  566 tgag 569  Q
    ||||    
T  19674315 tgag 19674318  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 19657227 - 19657276
Alignment:
Q  311 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgct 360  Q
    |||||||| ||||||||||||| ||||||||||||||||| |||| ||||    
T  19657227 gcaagaaggcaactattccatctggtatgggaggtggtttcaaacctgct 19657276  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 19674071 - 19674120
Alignment:
Q  311 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgct 360  Q
    |||||||| ||||||||||||| ||||||||||||||||| |||| ||||    
T  19674071 gcaagaaggcaactattccatctggtatgggaggtggtttcaaacctgct 19674120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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