View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8040_low_2 (Length: 514)
Name: NF8040_low_2
Description: NF8040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8040_low_2 |
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| [»] scaffold0244 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 152 - 497
Target Start/End: Complemental strand, 37665620 - 37665271
Alignment:
| Q |
152 |
catgtaaattctctaaaattcgtagcattaccattgttcatgacattaaggattaactcatttggagtacttcttcaaatgattaatactcaactagtta |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37665620 |
catgtaaattctctaaaattcgtagcattaccattgttcatgacattaaggataaactcatttggagtacttcttcaaatgattaatactcaactagtta |
37665521 |
T |
|
| Q |
252 |
aggatatag----gtggttagatcgaatctaacgactcaacaaatagagccagttatttgttggaggtagacttggaggctaccgatttctgaaaatcta |
347 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37665520 |
aggatatagctaggtggttagatcgaatctaacgactcaacaaatagagccagttatttgttggaggtagacttggaggctaccgatttctgaaaatcta |
37665421 |
T |
|
| Q |
348 |
agaaatttttgtttgtcggcgatgcatgctagcctccctaccaatgtctttcacggttcaagacatcttacctcttatacttgtcatagatgtggtggac |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
37665420 |
agaaatttttgtttgtcggcgatgcatgctagcctccctaccaatgtctttcgcggttcaggacatcttacctcttatacttgtcatagatgttgtggat |
37665321 |
T |
|
| Q |
448 |
ctacataaagtgatatgcatactcctcgtgattgtcctatggcaaataat |
497 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37665320 |
ctacataaagtgatatgcatgctcctcgtgattgtcctatggcaaataat |
37665271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 173 - 486
Target Start/End: Original strand, 13451421 - 13451735
Alignment:
| Q |
173 |
gtagcattaccattgttcatgacattaaggattaactcatttggagtacttcttcaaatgattaatactcaactagttaaggatataggtggttagatc- |
271 |
Q |
| |
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||||||||||||||| |||||||| | ||||| ||| ||||||| | ||| | |||||| | | | |||| |||||| |||||||||| |||| ||| |
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| T |
13451421 |
gtagcattaccattgatcatgacaatgaggatagacttatttggattgcttatccaaatggtcagttctcaggtagttatggatataggtagttaaatca |
13451520 |
T |
|
| Q |
272 |
gaatctaacgactcaacaaatagagccagttatttgttggaggtagacttggaggctaccgatttctgaaaatctaagaaatttttgtttgtcggcgatg |
371 |
Q |
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||||||||| | ||||| |||| || |||||||||||||| | || | ||||||| || ||||| ||||||||||| ||||| | | | | |||| |
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| T |
13451521 |
gaatctaac---ttaacaattagaacctgttatttgttggagttggattcagaggctatcggtttctaaaaatctaagacattttagctggcttgggatg |
13451617 |
T |
|
| Q |
372 |
catgctagcctccctaccaatgtctttcacggttcaagacatcttacctcttata---cttgtcatagatgtggtggacctacataaagtgatatgcata |
468 |
Q |
| |
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|||||||| |||||||| |||| ||| ||||||||||||||||||||| || ||||||||| |||||||| | | |||||| |||||||| |
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| T |
13451618 |
catgctagtctccctacgaatgccttctttggttcaagacatcttacctctggtacttcttgtcataaatgtggtgcatatgttgaaagtggtatgcata |
13451717 |
T |
|
| Q |
469 |
ctcctcgtgattgtccta |
486 |
Q |
| |
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||| |||||||||||||| |
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| T |
13451718 |
ctcttcgtgattgtccta |
13451735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 37665759 - 37665681
Alignment:
| Q |
11 |
agaatatgaaaaaatggagaaatctttttatatattttnnnnnnnnnnttaagagtgataaatgaatatgttaatgacaag |
91 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
37665759 |
agaatatgaaaaaatggagaaatctttttatatattttaaaaaaaaaattaagagtgataaatga--atgttaatgacaag |
37665681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 169 - 493
Target Start/End: Complemental strand, 1260280 - 1259955
Alignment:
| Q |
169 |
attcgtagcattaccattgttcatgacattaaggattaactcatttggagtacttcttcaaatgattaatactcaactagttaaggatataggtggttag |
268 |
Q |
| |
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||||||||||||||||||| |||||||| | ||| |||||||||| ||| ||||| |||||| | |||||||| ||||||| |||||||||||||| | |
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| T |
1260280 |
attcgtagcattaccattgatcatgacaccgaagataaactcatttgaagtgcttctccaaatggtcaatactcagctagttatggatataggtggtttg |
1260181 |
T |
|
| Q |
269 |
atcg-aatctaacgactcaacaaatagagccagttatttgttggaggtagacttggaggctaccgatttctgaaaatctaagaaatttttgtttgtcggc |
367 |
Q |
| |
|
||| |||||||| ||||||| |||||| ||||| ||||||||| | || |||||||| | ||||||||||||||||| ||||||||| | || |
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| T |
1260180 |
atcataatctaac---tcaacaagtagagctagttaattgttggagttggatctggaggcttcaagtttctgaaaatctaagacatttttgttggctggt |
1260084 |
T |
|
| Q |
368 |
gatgcatgctagcctccctaccaatgtctttcacggttcaagacatcttacctcttata---cttgtcatagatgtggtggacctacataaagtgatatg |
464 |
Q |
| |
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|||||||||||||||||||| ||||| ||||| |||||| |||||||||||||| ||| ||||||| |||||||||| | | |||||||||| |
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| T |
1260083 |
gatgcatgctagcctccctatcaatgcctttcgtggttcacgacatcttacctctgatacatcttgtcaaagatgtggtgcatttgttgaaagtgatata |
1259984 |
T |
|
| Q |
465 |
catactcctcgtgattgtcctatggcaaa |
493 |
Q |
| |
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||||||| |||||| |||||||||||||| |
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| T |
1259983 |
catactcttcgtgactgtcctatggcaaa |
1259955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 282 - 493
Target Start/End: Original strand, 33509096 - 33509310
Alignment:
| Q |
282 |
actcaacaaatagagccagttatttgttggaggtagacttggaggctaccgatttctgaaaatctaagaaatttttgtttgtcggcgatgcatgctagcc |
381 |
Q |
| |
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||||||||| |||||||||||| ||||||||| | || | |||||| | | ||| ||||||||| ||| ||||||||| | || |||||||||||||| |
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| T |
33509096 |
actcaacaagtagagccagttaattgttggagttggatctagaggcttctggtttatgaaaatcttagacatttttgttggctggtgatgcatgctagcc |
33509195 |
T |
|
| Q |
382 |
tccctaccaatgtctttcacggttcaagacatcttacctcttata---cttgtcatagatgtggtggacctacataaagtgatatgcatactcctcgtga |
478 |
Q |
| |
|
|||||||||||| ||||| |||||| |||||||||||||| ||| ||||||| |||||||||| | | |||| ||||| ||||||| |||||| |
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| T |
33509196 |
tccctaccaatgcctttcgtggttcacgacatcttacctctgatacttcttgtcaaagatgtggtgcatttgttgaaagcgatatacatactcttcgtga |
33509295 |
T |
|
| Q |
479 |
ttgtcctatggcaaa |
493 |
Q |
| |
|
||||| ||||||||| |
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|
| T |
33509296 |
ttgtcatatggcaaa |
33509310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 299 - 496
Target Start/End: Complemental strand, 8905 - 8705
Alignment:
| Q |
299 |
agttatttgttggaggtagacttggaggctaccgatttctgaaaatctaagaaatttttgtttgtcggcgatgcatgctagcctccctaccaatgtcttt |
398 |
Q |
| |
|
||||| ||||||||| | || ||||||||| || ||||||||||||||||| ||||||||| || || |||||||| | ||||||||||||||| |||| |
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| T |
8905 |
agttaattgttggagttggatttggaggcttccagtttctgaaaatctaagacatttttgttggttggtgatgcatgatggcctccctaccaatgccttt |
8806 |
T |
|
| Q |
399 |
cacggttcaagacatcttacctcttatac---ttgtcatagatgtggtggacctacataaagtgatatgcatactcctcgtgattgtcctatggcaaata |
495 |
Q |
| |
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| |||||| |||||||||||||| |||| |||||| |||||||||| | | |||||||||| |||| || |||||| |||||||||| ||||| |
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| T |
8805 |
cgtggttcacgacatcttacctctgatacattttgtcaaagatgtggtgcatttgttgaaagtgatatacatagtcttcgtgactgtcctatggaaaata |
8706 |
T |
|
| Q |
496 |
a |
496 |
Q |
| |
|
| |
|
|
| T |
8705 |
a |
8705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 173 - 280
Target Start/End: Complemental strand, 14960 - 14852
Alignment:
| Q |
173 |
gtagcattaccattgttcatgacattaaggattaactcatttggagtacttcttcaaatgattaatactcaactagttaaggatataggtggttagatc- |
271 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||||||||||| ||||| |||||| | |||||||| ||||||| |||||||||||||| |||| |
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| T |
14960 |
gtagcattaccattgatcatgacaccgaggataaactcatttggagtgcttctccaaatggtcaatactcatctagttatggatataggtggtttgatca |
14861 |
T |
|
| Q |
272 |
gaatctaac |
280 |
Q |
| |
|
||||||||| |
|
|
| T |
14860 |
gaatctaac |
14852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 216 - 422
Target Start/End: Complemental strand, 40699367 - 40699163
Alignment:
| Q |
216 |
gagtacttcttcaaatgattaatactcaactagttaaggatataggtggttagatc-gaatctaacgactcaacaaatagagccagttatttgttggagg |
314 |
Q |
| |
|
|||| ||||| |||||| | |||| ||| ||||||| | ||||||||||||||||| ||||||||| ||||||| |||||| | ||| ||||||||| |
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| T |
40699367 |
gagtgcttctccaaatggtcaatattcagctagttatgaatataggtggttagatcagaatctaac---tcaacaagtagagctaattaattgttggagt |
40699271 |
T |
|
| Q |
315 |
tagacttggaggctaccgatttctgaaaatctaagaaatttttgtttgtcggcgatgcatgctagcctccctaccaatgtctttcacggttcaagacatc |
414 |
Q |
| |
|
| ||| |||||||| | |||||||||||||| | ||||||||| | | |||||||| ||||||||||||||||| |||| |||||| |||||| |
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| T |
40699270 |
tggacctggaggcttcaagtttctgaaaatctatggcatttttgttggatgaagatgcatgatagcctccctaccaatgcctttggtggttcacgacatc |
40699171 |
T |
|
| Q |
415 |
ttacctct |
422 |
Q |
| |
|
|||||||| |
|
|
| T |
40699170 |
ttacctct |
40699163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 408 - 493
Target Start/End: Original strand, 44922511 - 44922599
Alignment:
| Q |
408 |
agacatcttacctcttata---cttgtcatagatgtggtggacctacataaagtgatatgcatactcctcgtgattgtcctatggcaaa |
493 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||| | || |||||||||||||||||| |||||||||||||||| |||| |
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| T |
44922511 |
agacatcttacctctaatatttcttgtcatagatgtggtgaatctgttgaaagtgatatgcatactcttcgtgattgtcctatgacaaa |
44922599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 53910603 - 53910688
Alignment:
| Q |
189 |
tcatgacattaaggattaactcatttggagtacttcttcaaatgattaatactcaactagttaaggatataggtggttagatcgaa |
274 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| |||||| | ||| |||||||||||||||| |||||| |||||||||||||| |
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| T |
53910603 |
tcatgacattgaggatagactcatttggagtgcttctttagatggccaatactcaactagttattgatatatgtggttagatcgaa |
53910688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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