View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8040_low_3 (Length: 492)
Name: NF8040_low_3
Description: NF8040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8040_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 95 - 362
Target Start/End: Original strand, 11227252 - 11227519
Alignment:
| Q |
95 |
tttttgtgagcaaactgtggagaacatagaagacttgcaattactgcaagaagatgacaatgaacaagagccaaatgtcaatgaagaagaacaagaacct |
194 |
Q |
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| T |
11227252 |
tttttgtgagcaaactgtggagaacatagaagacttgcaattactgcaagaagatgacaatgaacaagagccaaatatcaatgaagaagaacaagaacct |
11227351 |
T |
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| Q |
195 |
gatgagccagagccaaatcttgatgaatatcataataactacagtgatgaagatgataatttcatgttagagtagtttaattatatgaacattttgtgct |
294 |
Q |
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| T |
11227352 |
gatgagccagagccaaatcttgatgaatatcataataactgtagtgatgaagatgctaatttcatgttagagtagtttaattatatgaacattttgtgct |
11227451 |
T |
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| Q |
295 |
tttctgataagctataagtcatagtttattgtgcttttcaactcaattaagttttatgaactttgtac |
362 |
Q |
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| T |
11227452 |
tttctaataagctataagtcatagtttattgttcttttcaactcaattaaggtttatgaactttgtac |
11227519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 444 - 492
Target Start/End: Original strand, 11227597 - 11227645
Alignment:
| Q |
444 |
agcaaattgtgcagatatttgattcgagatgaagtcaaaacgcaagtct |
492 |
Q |
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| T |
11227597 |
agcaaattgtgcagatatttgattcgagatgaagtcaaaacgcaagtct |
11227645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 362
Target Start/End: Original strand, 10128065 - 10128187
Alignment:
| Q |
240 |
gatgaagatgataatttcatgttagagtagtttaattatatgaacattttgtgcttttctgataagctataagtcatag--tttattgtgcttttcaact |
337 |
Q |
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| T |
10128065 |
gatgaacatgataatttaatgttagtg--gtttaattatatgaacattatgtgtttttcatataagctatcagacatagctctttttgtactcttcaact |
10128162 |
T |
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| Q |
338 |
caattaagttttatgaactttgtac |
362 |
Q |
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| T |
10128163 |
caattaatgtttatgaactttgtac |
10128187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 492
Target Start/End: Original strand, 10128266 - 10128314
Alignment:
| Q |
444 |
agcaaattgtgcagatatttgattcgagatgaagtcaaaacgcaagtct |
492 |
Q |
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| T |
10128266 |
agcaaattgtgcagatatttgatttaagatgaagtagaaatgcaagtct |
10128314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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