View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8040_low_4 (Length: 443)
Name: NF8040_low_4
Description: NF8040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8040_low_4 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 425
Target Start/End: Complemental strand, 35921254 - 35920849
Alignment:
| Q |
20 |
acaacaataaactctataacaacaccattattaacctcaaaggcatttctgtatgttgttcaaacttcgaatgactaataatgaaatataactcacaatc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
35921254 |
acaacaataaactctataacaacaccattattaacctcaaaggcatttctgtatgttgttcaaacttcgaatgactaataatgaaatataactcgcaatc |
35921155 |
T |
|
| Q |
120 |
tcataattctaatttcattattatctatacttnnnnnnntttcagatagggaatgcttggattgatgatgctacgaatttaaaggggatatatgataact |
219 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
35921154 |
tcataattctaatctcattattatctatacttaaaaaaatttcagatagggaatgcttggattgatgatgcgacgaatttaaaggggatatatgataact |
35921055 |
T |
|
| Q |
220 |
tgtggactcatgctttaaactcagatcaaactcatgagttgattgagaagtactgtgacttcactaaagaaaatgtttcagcaatttgtaacaatgcaac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35921054 |
tgtggactcatgctttaaactcagatcaaactcatgagttgattgagaagtactgtgacttcactaaagaaaatgtttcagcaatttgtaacaatgcaac |
35920955 |
T |
|
| Q |
320 |
tgataaggccttcgttgagacaggaaagatagacatctataacatctatgcgccattgtgtcatgactcttctctgaaaaatggttctagtactggttac |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35920954 |
tgataaggccttcgttgagacaggaaagatagacatctataacatccatgcgccattgtgtcatgactcttctctgaaaaatggttctagtactggttac |
35920855 |
T |
|
| Q |
420 |
gtaagc |
425 |
Q |
| |
|
|||||| |
|
|
| T |
35920854 |
gtaagc |
35920849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 406
Target Start/End: Complemental strand, 35940231 - 35939841
Alignment:
| Q |
12 |
tattctacacaacaataaactctataacaacaccattattaacctcaaaggcatttctgtatgttgttcaaacttcgaatgactaataatgaaatataac |
111 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||||| |
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|
| T |
35940231 |
tattctacacaacaataaactctataagaacaccattattaacctcaaaggcatttctgtatgttgatcaaacttcaaaagactaataatgcaatataaa |
35940132 |
T |
|
| Q |
112 |
tcacaatctcataattctaatttcattattatctatacttnnnnnnntttcagatagggaatgcttggattgatgatgctacgaatttaaaggggatata |
211 |
Q |
| |
|
||||||||||||| ||||| |||||||| || ||| | |||||| |||||||||||||||||||||||||||| | |||||||||| |||| |
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|
| T |
35940131 |
tcacaatctcatatatctaacttcattat---ctgtacatacaaaa-tttcagttagggaatgcttggattgatgatgctacaagtttaaaggggttata |
35940036 |
T |
|
| Q |
212 |
tgataacttgtggactcatgctttaaactcagatcaaactcatgagttgattgagaagtactgtgacttcactaaagaaaatgtttcagcaatttgtaac |
311 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
35940035 |
tgataacttgtggactcatgctttgaactcggatcaaactcatgagttgattgagaagtactgtgacttcactaaacaaaattattcagcaatttgtacc |
35939936 |
T |
|
| Q |
312 |
aatgcaactgataaggccttcgttgagacaggaaagatagacatctataacatctatgcgccattgtgtcatgactcttctctgaaaaatggttc |
406 |
Q |
| |
|
||||||| ||| | || | |||||| ||||||||||||| || |||||||||||| ||||| ||||| |||||| |||||||||||||||| |
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|
| T |
35939935 |
aatgcaatgaatatgtccatgattgagaaaggaaagatagactcctttaacatctatgctccattatgtcacgactctactctgaaaaatggttc |
35939841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 406
Target Start/End: Complemental strand, 35910455 - 35910058
Alignment:
| Q |
12 |
tattctacacaacaataaactctataacaacaccattattaacctcaaaggcatttctgtatgttgttcaaacttcgaatgactaataatgaaatataac |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| |||||| || ||| || ||||||| |||| |
|
|
| T |
35910455 |
tattctacacaacaataaactctataacaacaccattgttaacctcaaaggcatttctgtatgattttccaacttcaaaagaccaagtatgaaatgtaac |
35910356 |
T |
|
| Q |
112 |
tcacaatctcataattctaatttcattattatctatacttnnnnnnntttcagatagggaatgcttggattgatgatgctacgaatttaaaggggatata |
211 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||||| ||||| |||||||||||||||||||||||||||||||| || | |||||||||| | | |
|
|
| T |
35910355 |
tcacaatctcataaatctaacttcagtattatctttactttaaaaaatttcagatagggaatgcttggattgatgatgccacaagtttaaaggggttttt |
35910256 |
T |
|
| Q |
212 |
tgataacttgtggactcatgctttaaactcagatcaaactcatgagttgattgagaagtactgtgacttcactaaagaaaatgtttcagcaatttgt--- |
308 |
Q |
| |
|
|||| || | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35910255 |
tgattacctttggactcatgctttgaactcagatcaaactcatgagttgattgagaagtactgtgacttcactactgaaaatgtttcagcaatttgtatc |
35910156 |
T |
|
| Q |
309 |
aacaatgcaactgataaggccttcgttgagaca-ggaaagatagacatctataacatctatgcgccattgtgtcatgactcttctctgaaaaatggttc |
406 |
Q |
| |
|
|| |||| ||| ||||||||| |||| ||| |||||||||||| | |||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35910155 |
aataatgtaacactaaaggccttctttga-acatggaaagatagacttatataacatctatgctccattgtgtcatgactcctctctgaaaaatggttc |
35910058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 406
Target Start/End: Complemental strand, 35934668 - 35934275
Alignment:
| Q |
12 |
tattctacacaacaataaactctataacaacaccattattaacctcaaaggcatttctgtatgttgttcaaacttcgaatgactaataatgaaatataac |
111 |
Q |
| |
|
|||||| ||| || |||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||| |||| || ||||||||||| |||||||| |
|
|
| T |
35934668 |
tattcttcaccaccataaactctataacaaaaccatcattaacctcaaaggcatatctgtatgttgatcaatcttcaaaagactaataatgcaatataac |
35934569 |
T |
|
| Q |
112 |
tcacaatctcataattctaatttcattattatctatacttnnnnnnntttcagatagggaatgcttggattgatgatgctacgaatttaaaggggatata |
211 |
Q |
| |
|
|||| ||| |||| |||| ||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||| | |||||| ||| |
|
|
| T |
35934568 |
tcactatcacatataactaacttcatgattatttgtacttcaaatt-tttcagatagggaatgcttggattgatgatgctacaggtgacaaggggttatt |
35934470 |
T |
|
| Q |
212 |
tgataacttgtggactcatgctttaaactcagatcaaactcatgagttgattgagaagtactgtgacttcactaaagaaaatgtttcagcaatttgtaac |
311 |
Q |
| |
|
|||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||| | |
|
|
| T |
35934469 |
tgattacttctggactcatgctttgaactcagatcaaactcatgagttgattgagaagtactgtgacttcactaaacaaaattattcaacaatttgtatc |
35934370 |
T |
|
| Q |
312 |
aatgcaactgataaggccttcgttgagacaggaaagatagacatctataacatctatgcgccattgtgtcatgactcttctctgaaaaatggttc |
406 |
Q |
| |
|
|||| ||| ||| ||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35934369 |
aatgtaacagattgggccttcattgagaaaggaaagatagacttctataacatctatgcgccattgtgtcatgactcttctctgaaaaatggttc |
35934275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 403
Target Start/End: Complemental strand, 35914890 - 35914499
Alignment:
| Q |
12 |
tattctacacaacaataaactctataacaacaccattattaacctcaaaggcatttctgtatgttgttcaaacttcgaatgactaataatgaaatataac |
111 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| |
|
|
| T |
35914890 |
tattcttcacaacaataaactctataacaacaccactattaacctcaaaggcatttctgtatgttgttcaaactttgaaagactaataatgcaatataac |
35914791 |
T |
|
| Q |
112 |
tcacaatctcataattctaatttcattattatctatacttnnnnnnntttcagatagggaatgcttggattgatgatgctacgaatttaaaggggatata |
211 |
Q |
| |
|
| ||| ||||||| ||||| || || ||||||| ||| |||||||||||||||||||||||||||||||| || ||||| |||| ||| |
|
|
| T |
35914790 |
tgtcaacctcataaatctaactttatcattatctttacaataaaaaatttcagatagggaatgcttggattgatgatgccacaggtttaagggggttatt |
35914691 |
T |
|
| Q |
212 |
tgataacttgtggactcatgctttaaactcagatcaaactcatgagttgattgagaagtactgtgacttcactaaagaaaatgtttcagcaatttgtaac |
311 |
Q |
| |
|
|||| || | ||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| ||||||||| | |
|
|
| T |
35914690 |
tgattacctttggactcatgcgttgaactcggatcaaactcatgagttgattgagaagtattgtgacttcacttctgaaaacgtttcatcaatttgtatc |
35914591 |
T |
|
| Q |
312 |
aatgcaactgataaggccttcgttgagacaggaaagatagacatctataacatctatgcgccattgtgtcatgactcttctctgaaaaatgg |
403 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||| ||| | ||||||||||||||||| |||||||| |
|
|
| T |
35914590 |
aatgcaacacataaggccttccttgagcaaggaaagatagactcctataacatctatgctccactatgtcatgactcttctctcaaaaatgg |
35914499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 12 - 406
Target Start/End: Complemental strand, 35927855 - 35927449
Alignment:
| Q |
12 |
tattctacacaacaataaactctataacaacaccattattaacctcaaaggcatttctgtatgttgttcaaacttcgaatgactaataatgaaatataac |
111 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| || ||| || ||||||| |||| |
|
|
| T |
35927855 |
tattcttcacaacaataaactctataacaacactgttattaacctcaaaggcatttctgtatgttcttcaaacttcaaaagaccaagtatgaaatgtaac |
35927756 |
T |
|
| Q |
112 |
tcacaatctcataattctaatttcattattatctatacttnnnnnnntttcagatagggaatgcttggattgatgatgctacgaatttaaaggggatata |
211 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||| ||||| |||||||||||||||||||||||||||||||| || | ||| |||||| ||| |
|
|
| T |
35927755 |
tcacaatctcataaatctaactttattattatctttactttaaaaaatttcagatagggaatgcttggattgatgatgccacaagtttgaaggggttatt |
35927656 |
T |
|
| Q |
212 |
tgataacttgtggactcatgctttaaactcagatcaaactcatgagttgattgagaagtactgtgactt------------cactaaagaaaatgtttca |
299 |
Q |
| |
|
|||| |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| | |||| |||| |
|
|
| T |
35927655 |
tgattacttttggactcatgctttgaattcagatcaaactcatgagttgattgagaagtactgtgacttcactgttgacttcactagtggaaatacttca |
35927556 |
T |
|
| Q |
300 |
gcaatttgtaacaatgcaactgataaggccttcgttgagacaggaaagatagacatctataacatctatgcgccattgtgtcatgactcttctctgaaaa |
399 |
Q |
| |
|
||||| || ||||||| ||| |||| ||| | | ||||| |||||||||||| ||||||||||||| || ||||||||||| ||||||||| |||||| |
|
|
| T |
35927555 |
gcaatatgcaacaatgtaacagatagggcttacactgagaaaggaaagatagatttctataacatctacgctccattgtgtcacgactcttctttgaaaa |
35927456 |
T |
|
| Q |
400 |
atggttc |
406 |
Q |
| |
|
||||||| |
|
|
| T |
35927455 |
atggttc |
35927449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 254 - 406
Target Start/End: Original strand, 21285096 - 21285251
Alignment:
| Q |
254 |
tgagttgattgagaagtactgtgacttcactaaagaaaatgtttcagcaatttgtaacaat---gcaactgataaggccttcgttgagaca-ggaaagat |
349 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| | ||| |||||||| |||| ||| |||||||| |
|
|
| T |
21285096 |
tgagttgattgagaagtactgtggcttcactactgaaaatgtttcagcaatttgtatcaataatgtaacactaaaggccttgtttga-acatggaaagat |
21285194 |
T |
|
| Q |
350 |
agacatctataacatctatgcgccattgtgtcatgactcttctctgaaaaatggttc |
406 |
Q |
| |
|
|||| | |||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21285195 |
agacttatataacatctatgctccattgtgtcatgactcctctctgaaaaatggttc |
21285251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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