View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8040_low_5 (Length: 440)
Name: NF8040_low_5
Description: NF8040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8040_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 223 - 431
Target Start/End: Original strand, 1095117 - 1095322
Alignment:
| Q |
223 |
aatataaaggtataccaatatttttgtatacatcatcactcactagaattttagtatacacccactataattatgaaacaaaacaaaataaaacttcaat |
322 |
Q |
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| T |
1095117 |
aatataaaggtataccaatatttttgtatacatc---actcactagaattttagtatacacccactataattatgaaacaaaacaaaataaaacttcaat |
1095213 |
T |
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| Q |
323 |
tatattgaaaaggtaacaagtcttacaagaattttaaacaacatacctttgttttagcctttaaattttcaacctcatcactagtatctgggacatgaaa |
422 |
Q |
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| T |
1095214 |
tatattgaaaaggtaacaagtcttacaagaattttaaacaacatacctttgttttagcctttaaattttcaacctcatcactagtatctgggacatgaaa |
1095313 |
T |
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| Q |
423 |
caggaaatg |
431 |
Q |
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||||||||| |
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| T |
1095314 |
caggaaatg |
1095322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 1094894 - 1095084
Alignment:
| Q |
1 |
ggacgtttagttctgtcaactttgattacatataccaacggcaaaattccgtcccaatagcatatagctttggtagcttcagacaacaaaatttaagact |
100 |
Q |
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| T |
1094894 |
ggacgtttagttctgtcaactttgattacatataccaacggcaaaattccgtcccaatagcatatagctttggtagtttcagacaacaaaatttaagact |
1094993 |
T |
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| Q |
101 |
tacatctattgtcaatgacatgtatttaattgttttacccataggagttttccgttggtataagtttgggaatattttgcagtataaatag |
191 |
Q |
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| T |
1094994 |
tacatctattgtcaatgacatgtatttaattgttttacccatagcagttttccgttggtataagtttgggaatattttgcagtataaatag |
1095084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 1078089 - 1078208
Alignment:
| Q |
1 |
ggacgtttagttctgtcaactttgattacatataccaacggcaaaattccgtcccaatagcatatagctttggtagcttcagacaacaaaatttaagact |
100 |
Q |
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| T |
1078089 |
ggacgtttagttccgtcaactttgattagatataccaatggaaaaatttcatctcaatagcctatagctacagtagttttggacaacaaaatgtgagact |
1078188 |
T |
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| Q |
101 |
tacatctattgtcaatgaca |
120 |
Q |
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|| | ||| |||||||||| |
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| T |
1078189 |
tatacctacggtcaatgaca |
1078208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1065610 - 1065657
Alignment:
| Q |
1 |
ggacgtttagttctgtcaactttgattacatataccaacggcaaaatt |
48 |
Q |
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| T |
1065610 |
ggacgtttagctccgtcaactttgattagatataccaacggaaaaatt |
1065657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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