View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8040_low_7 (Length: 353)
Name: NF8040_low_7
Description: NF8040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8040_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 149 - 336
Target Start/End: Complemental strand, 30320895 - 30320708
Alignment:
| Q |
149 |
cattctttgtataatgaacagtacattaaaattggtccataaactattgatcgagcaaaacaaagttattccaaattccattgattccggccaactaatt |
248 |
Q |
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| T |
30320895 |
cattctttgtataatgaacagtacattaaaattggtccataaactattgatcgagcaaaacaaagttattccaaattccattgattccggccaactaatt |
30320796 |
T |
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| Q |
249 |
tgtaaattccaataaatagttatcatttctttataggatttaaatgataatcaatattgttaataagcctataatcatacccattagt |
336 |
Q |
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| T |
30320795 |
tgtaaattccaataaatagttatcctttctttataggatttaaatgataatcaatattgttaataagcctataatcatacccattagt |
30320708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 30321029 - 30320964
Alignment:
| Q |
15 |
atgaacacggacaaactgtctattgaaaatgttcctaaaatcattcaatgattttaatcatgtgtc |
80 |
Q |
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| T |
30321029 |
atgaacaaggacaaactgtctattgaaaatgtttctgaaatcattcagttattttaatcatgtgtc |
30320964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 149 - 336
Target Start/End: Complemental strand, 2346065 - 2345878
Alignment:
| Q |
149 |
cattctttgtataatgaacagtacattaaaattggtccataaactattgatcgagcaaaacaaagttattccaaattccattgattccggccaactaatt |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2346065 |
cattctttgtataatgaacagtacattaaaattggtccataaactattgatcgagcaaaacaaagttattccaaattccattcattccggccaactaatt |
2345966 |
T |
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| Q |
249 |
tgtaaattccaataaatagttatcatttctttataggatttaaatgataatcaatattgttaataagcctataatcatacccattagt |
336 |
Q |
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| T |
2345965 |
tgtaaattccaataaatagttatcctttctttataggatttaaatgataatcaatattgttaataagcctataatcatacccattagt |
2345878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 2346199 - 2346134
Alignment:
| Q |
15 |
atgaacacggacaaactgtctattgaaaatgttcctaaaatcattcaatgattttaatcatgtgtc |
80 |
Q |
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| T |
2346199 |
atgaacaaggacaaactatctattgaaaatgtttctaaaatcattcagttattttaatcatgtgtc |
2346134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 149 - 336
Target Start/End: Original strand, 25335940 - 25336127
Alignment:
| Q |
149 |
cattctttgtataatgaacagtacattaaaattggtccataaactattgatcgagcaaaacaaagttattccaaattccattgattccggccaactaatt |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25335940 |
cattctttgtataatgaacagtacattaaaattggtccataaactattgatcgagcaaaacaaagttataccaaattccattgattccggccaactaatt |
25336039 |
T |
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| Q |
249 |
tgtaaattccaataaatagttatcatttctttataggatttaaatgataatcaatattgttaataagcctataatcatacccattagt |
336 |
Q |
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| T |
25336040 |
tgtaaattccaacaaatagttatcctttctttataggatttaaatgataatcaatattgttaataagcctataatcatacccattagt |
25336127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 25335806 - 25335869
Alignment:
| Q |
15 |
atgaacacggacaaactgtctattgaaaatgttcctaaaatcattcaatgattttaatcatgtg |
78 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
25335806 |
atgaacaaggacaaactgtctattgaaaatgtttctaaaatcattcaattattttaatcatgtg |
25335869 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 149 - 336
Target Start/End: Complemental strand, 3648372 - 3648185
Alignment:
| Q |
149 |
cattctttgtataatgaacagtacattaaaattggtccataaactattgatcgagcaaaacaaagttattccaaattccattgattccggccaactaatt |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3648372 |
cattctttgtataatgaacagtacattaaaattggtccataaactattgatcgagcaaaacaaagttattccaaattccattgattccggccaactaatt |
3648273 |
T |
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| Q |
249 |
tgtaaattccaataaatagttatcatttctttataggatttaaatgataatcaatattgttaataagcctataatcatacccattagt |
336 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3648272 |
tgtaaattccaataaatagttatcctttctttatgggatttaaatgattatcaatattgttaataagcctataatcatacccattagt |
3648185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 3648506 - 3648441
Alignment:
| Q |
15 |
atgaacacggacaaactgtctattgaaaatgttcctaaaatcattcaatgattttaatcatgtgtc |
80 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |
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| T |
3648506 |
atgaacaaggacaaactgtctattgaaaatgtttctaaaatcattcagttattttaatcatgtgtc |
3648441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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