View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8040_low_9 (Length: 323)
Name: NF8040_low_9
Description: NF8040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8040_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 30418816 - 30419122
Alignment:
| Q |
1 |
accatcactcatctctaccagtatgatgtttggccctccttggatccaataactagttttcactatcaagaaatcttcttcatggactaggatgctcaca |
100 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30418816 |
accaccactcatctctaccattatgatgtttggccctccttggatccaataactagttttcactatcaagaaatcttcttcatggactagggtgctcaca |
30418915 |
T |
|
| Q |
101 |
taagttttttgtaggttgttgaaaatggatgattcatttatacctcaaagacctccgcctattgtatccttcccaccacctactacctcatcgacccacc |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
30418916 |
taagttttttgcaggttgttgaaaatggatgattcatctatacctcaaagacctccgccgactgtatccttcccaccacctactacctcatcgacccacc |
30419015 |
T |
|
| Q |
201 |
atcacttccatctcagatgaaacctccttattcacaaacactgtaagaaaagacttaccttgttggaccttcctctccttccctgtaaagcctcaccatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30419016 |
atcacttccatctcagatgaaacctccttattcacaaacactgtcagaaaagacttaccttgttggaccttcctctccttccctgtaaagcctcgccatt |
30419115 |
T |
|
| Q |
301 |
cgttatt |
307 |
Q |
| |
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||||||| |
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| T |
30419116 |
cgttatt |
30419122 |
T |
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