View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8041_high_2 (Length: 302)

Name: NF8041_high_2
Description: NF8041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8041_high_2
NF8041_high_2
[»] chr3 (10 HSPs)
chr3 (9-193)||(28151505-28151689)
chr3 (230-302)||(28151396-28151468)
chr3 (78-193)||(27920142-27920257)
chr3 (78-193)||(11420843-11420958)
chr3 (133-193)||(28506718-28506778)
chr3 (87-190)||(27459022-27459120)
chr3 (78-140)||(27954280-27954342)
chr3 (78-136)||(8539386-8539446)
chr3 (34-107)||(28037380-28037453)
chr3 (268-300)||(28506854-28506886)
[»] chr2 (1 HSPs)
chr2 (9-88)||(8020792-8020871)
[»] scaffold0922 (1 HSPs)
scaffold0922 (66-135)||(1665-1737)


Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 28151689 - 28151505
Alignment:
Q  9 acatcaacatcttgagggggtagaagctttgatatggcgattgaagaagaagatactgctctttggctgtcaccttcttcctaaaaaattcaaataaaag 108  Q
    |||||||||||||||| || || | |||||| |||| | |||| || | ||| || |||||||||| |||||||||||||||| ||||||||||||||||    
T  28151689 acatcaacatcttgagtggttacaggctttgttatgtcaattggagtataagctattgctctttggttgtcaccttcttcctacaaaattcaaataaaag 28151590  T
Q  109 aatgatatcattatgaattcttaatatttataggatcaggcacgctatagatattttcgtctgaaataggcttacttcattatag 193  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28151589 aatgatatcattatgaattcttaatatttataggatcagccacgctatagatattttcgtctgaaataggcttacttcattatag 28151505  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 28151468 - 28151396
Alignment:
Q  230 gcagtaggctcccaacgcaatgaaatatataaaaaatgaacaataatacttgtaagaagaagacctgtgaaga 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28151468 gcagtaggctcccaacgcaatgaaatatataaaaaatgaacaataatacttgtaagaagaagacctgtgaaga 28151396  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 193
Target Start/End: Complemental strand, 27920257 - 27920142
Alignment:
Q  78 tcaccttcttcctaaaaaattcaaataaaagaatgatatcattatgaattcttaatatttataggatcaggcacgctatagatattttcgtctgaaatag 177  Q
    ||||| |||||||| |||||||| ||||||||||||||| || || |||||||| ||||||||| ||||| | ||||||| ||||||| | || |||||     
T  27920257 tcaccatcttcctacaaaattcatataaaagaatgatattatcatcaattcttactatttatagcatcagcctcgctatatatatttttgcctaaaataa 27920158  T
Q  178 gcttacttcattatag 193  Q
    ||||||||||||||||    
T  27920157 gcttacttcattatag 27920142  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 78 - 193
Target Start/End: Complemental strand, 11420958 - 11420843
Alignment:
Q  78 tcaccttcttcctaaaaaattcaaataaaagaatgatatcattatgaattcttaatatttataggatcaggcacgctatagatattttcgtctgaaatag 177  Q
    ||||| ||| ||||||||||||||||| | |||| ||||||| ||||||||||||||||| ||| ||||| | | ||||| ||||||| || || || ||    
T  11420958 tcaccatctacctaaaaaattcaaatatacgaattatatcatcatgaattcttaatatttttagtatcagcctcactatatatattttagtttggaacag 11420859  T
Q  178 gcttacttcattatag 193  Q
    ||||||||||||||||    
T  11420858 gcttacttcattatag 11420843  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 28506718 - 28506778
Alignment:
Q  133 tatttataggatcaggcacgctatagatattttcgtctgaaataggcttacttcattatag 193  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||    
T  28506718 tatttataggatcagccacactatagatattttcgtctgaaataggcttacttcatgatag 28506778  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 190
Target Start/End: Original strand, 27459022 - 27459120
Alignment:
Q  87 tcctaaaaaattcaaataaaagaatgatatcattatgaattcttaatatttataggatcaggcacgctatagatattttcgtctgaaataggcttacttc 186  Q
    ||||| ||||||||||||||||||||||||||| |||||     |||| |||||||||| | ||| ||||| |||||||||||||| |||||||| ||||    
T  27459022 tcctacaaaattcaaataaaagaatgatatcatcatgaa-----aatagttataggatcggccacactatatatattttcgtctgagataggcttgcttc 27459116  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 27954342 - 27954280
Alignment:
Q  78 tcaccttcttcctaaaaaattcaaataaaagaatgatatcattatgaattcttaatatttata 140  Q
    ||||| |||||||| |||||||| ||||||||||||||| || || |||||||| ||||||||    
T  27954342 tcaccatcttcctacaaaattcatataaaagaatgatattatcatcaattcttactatttata 27954280  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 8539386 - 8539446
Alignment:
Q  78 tcaccttcttcctaaaaaattcaaataaaagaatgatatcatt--atgaattcttaatatt 136  Q
    ||||| |||||||| |||||||| |||||||||||||||  ||  ||||||||||||||||    
T  8539386 tcaccatcttcctacaaaattcatataaaagaatgatattttttcatgaattcttaatatt 8539446  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 28037453 - 28037380
Alignment:
Q  34 gctttgatatggcgattgaagaagaagatactgctctttggctgtcaccttcttcctaaaaaattcaaataaaa 107  Q
    |||||| |||||  ||||||| ||||| ||  ||||||||||  ||||| |||||||| |||||||||||||||    
T  28037453 gctttgttatggtaattgaaggagaagctatggctctttggccatcaccctcttcctacaaaattcaaataaaa 28037380  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 300
Target Start/End: Original strand, 28506854 - 28506886
Alignment:
Q  268 aacaataatacttgtaagaagaagacctgtgaa 300  Q
    ||||||||||||||||| |||||||||||||||    
T  28506854 aacaataatacttgtaaaaagaagacctgtgaa 28506886  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 8020871 - 8020792
Alignment:
Q  9 acatcaacatcttgagggggtagaagctttgatatggcgattgaagaagaagatactgctctttggctgtcaccttcttc 88  Q
    |||||||||||||||| || |||| |||||| |||||||||||||| ||||| ||  ||||||||| |||||||||||||    
T  8020871 acatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctatagctctttggttgtcaccttcttc 8020792  T

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Target: scaffold0922 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 1737 - 1665
Alignment:
Q  66 gctctttggctgtcaccttcttcctaaaaaattcaaataaaa---gaatgatatcattatgaattcttaatat 135  Q
    ||||||||||  ||||| |||||||| ||||||||||| |||   |||||||||||| |||||||||||||||    
T  1737 gctctttggccatcaccatcttcctacaaaattcaaatcaaattagaatgatatcatcatgaattcttaatat 1665  T

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