View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8041_low_3 (Length: 299)

Name: NF8041_low_3
Description: NF8041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8041_low_3
NF8041_low_3
[»] chr6 (1 HSPs)
chr6 (14-291)||(26463677-26463953)
[»] chr7 (3 HSPs)
chr7 (161-286)||(49041845-49041969)
chr7 (24-62)||(29143806-29143844)
chr7 (24-52)||(47558608-47558636)
[»] chr4 (2 HSPs)
chr4 (78-161)||(48062831-48062917)
chr4 (24-62)||(55866928-55866966)
[»] chr1 (2 HSPs)
chr1 (245-291)||(31197650-31197696)
chr1 (14-44)||(31197561-31197591)


Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 26463677 - 26463953
Alignment:
Q  14 actataacatcttgtgtgcgttgtttttgttgttcttgtcgacggcgaaggtacgatggcgaaggtatgtacaagtatcaactagcaacacatgaaaact 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26463677 actataacatcttgtgtgcgttgtttttgttgttcttgtcgacggcgaaggtacgatggcgaaggtatgtacaagtatcaactagcaacacatgaaaact 26463776  T
Q  114 tgaattacatttcttagcagacagaaaccatgttgtaatggtttgataacatgtgttaattcaagagacattgacatccttgttgtaaaattgtagtttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26463777 tgaattacatttcttagcagacagaaaccatgttgtaatggtttgataacatgtgttaattcaagagacattgacatccttgttgt-aaattgtagtttg 26463875  T
Q  214 tataacccaactccttccgtttctgcaatgattgtgaaccatgacaagctaagaacaaacattaaaagctatattctt 291  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26463876 tataacccaactccttccctttctgcaatgattgtgaaccatgacaagctaagaacaaacattaaaagctataatctt 26463953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 161 - 286
Target Start/End: Complemental strand, 49041969 - 49041845
Alignment:
Q  161 aacatgtgttaattcaagagacattgacatccttgttgtaaaattgtagtttgtataacccaactccttccgtttctgcaatgattgtgaaccatgacaa 260  Q
    |||| |||||||| |||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||  ||||||||||||||||||||||| ||||    
T  49041969 aacaggtgttaatccaagagacattgacattcttgttgtaaa-ttgtagtttgtttaacccaactccttcactttctgcaatgattgtgaaccattacaa 49041871  T
Q  261 gctaagaacaaacattaaaagctata 286  Q
    ||| ||||||||||||||||||||||    
T  49041870 gcttagaacaaacattaaaagctata 49041845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 29143844 - 29143806
Alignment:
Q  24 cttgtgtgcgttgtttttgttgttcttgtcgacggcgaa 62  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29143844 cttgtgtgcgttgtttttgttgttcttgtcgacggcgaa 29143806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 47558608 - 47558636
Alignment:
Q  24 cttgtgtgcgttgtttttgttgttcttgt 52  Q
    |||||||||||||||||||||||||||||    
T  47558608 cttgtgtgcgttgtttttgttgttcttgt 47558636  T

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Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 48062831 - 48062917
Alignment:
Q  78 gtatgtacaagtatcaactagcaacacatgaaaacttgaat---tacatttcttagcagacagaaaccatgttgtaatggtttgata 161  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||| ||||||  | |||||||||||    
T  48062831 gtatgtacaagtatcaactagcaacacatgaaaacttgaatctgtacatttcttagcagacagaagccatgtcatcatggtttgata 48062917  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 55866928 - 55866966
Alignment:
Q  24 cttgtgtgcgttgtttttgttgttcttgtcgacggcgaa 62  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  55866928 cttgtgtgcgttgattttgttgttcttgtcgactgcgaa 55866966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 31197650 - 31197696
Alignment:
Q  245 ttgtgaaccatgacaagctaagaacaaacattaaaagctatattctt 291  Q
    ||||||| ||| |||||||||||||||||||||||||||||| ||||    
T  31197650 ttgtgaatcattacaagctaagaacaaacattaaaagctataatctt 31197696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 31197561 - 31197591
Alignment:
Q  14 actataacatcttgtgtgcgttgtttttgtt 44  Q
    |||||||||||||||||||||||||||||||    
T  31197561 actataacatcttgtgtgcgttgtttttgtt 31197591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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