View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8041_low_4 (Length: 238)
Name: NF8041_low_4
Description: NF8041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8041_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26455853 - 26456086
Alignment:
| Q |
1 |
ccaactttcttattagggctctcaacctttgaggggagatt-----------gagctcatctatatcgtggccaggacaccatttcagtaacaatnnnnn |
89 |
Q |
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| T |
26455853 |
ccaactttcttattagggctctcaacctttgaggggagattttcatttggttgagctcatctatatcgtggccaggacaccatttcagtaacaataaaaa |
26455952 |
T |
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| Q |
90 |
nnntgctctcatgtgtcatgcaaagactctgcatcagcatgcttaaaatgagtgattttagcacgattttatccatgaacttggtgactgcaaacaaacg |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26455953 |
aaatgctctcatgtgtcatgcaaagactctgcatcagcatgcttaaaatgagtgattttagcacgattttatccatgaacttggtgactgcaaacaaacg |
26456052 |
T |
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| Q |
190 |
ctccaaannnnnnncttcctcaagctctaaaact |
223 |
Q |
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||||||| |||||||||||||||||||| |
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| T |
26456053 |
ctccaaatttttttcttcctcaagctctaaaact |
26456086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 26456315 - 26456413
Alignment:
| Q |
95 |
ctctcatgtgtcatgcaaagactctgcatcagcatgcttaaaatgagtgattttagcacgattttatccatgaacttggtgactgcaaacaaacgctcca |
194 |
Q |
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||||||||||||||||||||| | ||||||| |||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
26456315 |
ctctcatgtgtcatgcaaagaatatgcatcaacatgctcaaaatgagtgactttagcacgattt--cccatgaacttggtgactgcaaataaacgctcca |
26456412 |
T |
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