View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8041_low_6 (Length: 235)
Name: NF8041_low_6
Description: NF8041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8041_low_6 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 39049511 - 39049277
Alignment:
| Q |
1 |
tgtgcatattgcgattaaaacttctaataaatcttgatcattgtaacttaaagtggttgtcattgcaaccattatcaatgtgattaatacgatatggtat |
100 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39049511 |
tgtgcatattgtgattaaaatttgtaataaatcttgatcattgtaacataaagtggttgtcattgcaaccattatcaatgtgattaatacgatatggtat |
39049412 |
T |
|
| Q |
101 |
tgtagaaacatacatatatttgattgtgttaatattaattggtggtctgttgtgatttcaaaagttgtttgtctaggctcatcagttcatgtgcctaatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39049411 |
agtagaaacatacatatatttgattgtgttaatattaattggtggtctgttgtgatttcaaaagttgtttgtctaggctcatcagttcatgtgcctaatg |
39049312 |
T |
|
| Q |
201 |
atccttgcattaaggagattgttggcagtcacatc |
235 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39049311 |
atccttgcattaaggagatggttggcagtcacatc |
39049277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 39047199 - 39046965
Alignment:
| Q |
1 |
tgtgcatattgcgattaaaacttctaataaatcttgatcattgtaacttaaagtggttgtcattgcaaccattatcaatgtgattaatacgatatggtat |
100 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39047199 |
tgtgcatattgtgattaaaacttgtaataaatcttgatcaccgtaatataaagtgggtgtcattgcaaccattatcaatgtgattaatacgatatggtat |
39047100 |
T |
|
| Q |
101 |
tgtagaaacatacatatatttgattgtgttaatattaattggtggtctgttgtgatttcaaaagttgtttgtctaggctcatcagttcatgtgcctaatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39047099 |
tgtagaaacatacatatatttgattgtgtcaatattaattggtggactgctgtgatttcaaaagttgtttgtctaggctcatcagttcatgttcctaatg |
39047000 |
T |
|
| Q |
201 |
atccttgcattaaggagattgttggcagtcacatc |
235 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| |
|
|
| T |
39046999 |
atccttgcattaaggagatggttggcagtcccatc |
39046965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 14722426 - 14722342
Alignment:
| Q |
25 |
taataaatcttgatcattgtaacttaaagtggttgtcattgcaaccattatcaatgtgattaatacgatatggtattgtagaaaca |
110 |
Q |
| |
|
|||||||||||| |||| |||| | ||||||| |||||| || |||||||||||||||| |||| |||||||| |||||||||| |
|
|
| T |
14722426 |
taataaatcttggtcatcgtaatgtgaagtggtggtcatt-cagccattatcaatgtgataaatatcatatggtaatgtagaaaca |
14722342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 17601766 - 17601850
Alignment:
| Q |
25 |
taataaatcttgatcattgtaacttaaagtggttgtcattgcaaccattatcaatgtgattaatacgatatggtattgtagaaaca |
110 |
Q |
| |
|
|||||||||||| |||| |||| | ||||||| |||||| || |||||||||||||||| |||| |||||||| |||||||||| |
|
|
| T |
17601766 |
taataaatcttggtcatcgtaatgtgaagtggtggtcatt-cagccattatcaatgtgataaatatcatatggtaatgtagaaaca |
17601850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University