View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8042_high_2 (Length: 277)
Name: NF8042_high_2
Description: NF8042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8042_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 42480291 - 42480478
Alignment:
| Q |
11 |
gaagaatatagaagaatgaaggtgtgtgtgagtgtgacctcaatgatgcaaagtggattgttattatatagaactttatgagaaattgtttggttgagtt |
110 |
Q |
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| T |
42480291 |
gaagaatgtggaagaatgaaggtgtgtgtgagtgtgaccttaatgatgcaaagtggattgctattatatagaactttatgagaaattgtttggttgagtt |
42480390 |
T |
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| Q |
111 |
tggtgtatgtgggccatacattacaagtgggtcccactcaaccaccacaatgtggacccctaagagaattcgtgcatatgtggtaact |
198 |
Q |
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| T |
42480391 |
tggtgtatctgggccatacattacaattgggtcccactcaaccaccacaatgtggacccctaagagaattcgtgcatatgtggtaact |
42480478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 273
Target Start/End: Original strand, 42481169 - 42481250
Alignment:
| Q |
190 |
gtggtaactgggttatatacatccatagtccatagcgaccacttatactcaaaaagtataactagaacaatatcggtagatacc |
273 |
Q |
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| T |
42481169 |
gtggtaactgggttata--catccatagtccataccgaccacttagactcacagaatataactgtaacaagatcagtagatacc |
42481250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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