View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8042_low_1 (Length: 423)
Name: NF8042_low_1
Description: NF8042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8042_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 36092860 - 36093242
Alignment:
| Q |
19 |
aaaaagtattctataataacaattgtaggaaactccaatgagcttgtgaaaatcatacatagaatctatgttctcactaaaacgagcagtgttttgaatt |
118 |
Q |
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|||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36092860 |
aaaaagtattatctaataacaattgaaggaaactccaatgagcttgtgaaaatcatacatagaatctatgttctcactaaaacgagcagtgttttgaatt |
36092959 |
T |
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| Q |
119 |
tgctcaagcttgagtcgaacgacttctctttcactttgtatattcttcctttgtctccaattagtcaaaatcttcttcacttcttgatgatcgataagag |
218 |
Q |
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| T |
36092960 |
tgctcaagtttgagtcgagcgacttctctttcactttgtatattcttcctttgtctccaattagccaaaatcttcttcacttcttgatgatcgataagag |
36093059 |
T |
|
| Q |
219 |
aatcaactgattttttataatttgtttgctctaaggaagtttcatgatcagtaaggctgnnnnnnnnnnnnnnnnncggcgttacgattttgttcgcaac |
318 |
Q |
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| T |
36093060 |
agtcaactgattttttataatttgtttgctctaaggaagtttcatgatcagtaactct------ttcttcttcttccggcgttacgattttgttcgcaac |
36093153 |
T |
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| Q |
319 |
cacactaattgaaacaacttttctctttttgaagaattttctttctagagaaaaatatttgcccttgaatgcacatcgaacctcttttc |
407 |
Q |
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| T |
36093154 |
cacactaattgaaacaacttttctctttttgcagaattttctttctagagaaaaatatttgcccttgaatgcacatcgaacctcttttc |
36093242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 407
Target Start/End: Original strand, 36086864 - 36087252
Alignment:
| Q |
16 |
agaaaaaagtattctataataacaattgtaggaaactccaatgagcttgtgaaaatcatacatagaatctatgttctcactaaaacgagcagtgttttga |
115 |
Q |
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||||||||||||||| |||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36086864 |
agaaaaaagtattctctaataacaattgaaggaaactcccatgagcttgtgaatatcatacatagaatctatgttctcactaaaacgagcagtgttttga |
36086963 |
T |
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| Q |
116 |
atttgctcaagcttgagtcgaacgacttctctttcactttgtatattcttcctttgtctccaattagtcaaaatcttcttcacttcttgatgatcgataa |
215 |
Q |
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||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36086964 |
atttgctcaagtttgagtcgagcgatttctctttcactttgtatattcttcctttgtctccaattagccaaaatcttcttcacttcttgatgatcgataa |
36087063 |
T |
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| Q |
216 |
gagaatcaactgattttttataatttgtttgctctaaggaagtttcatgatcagtaaggctgnnnnnnnnnnnnnnnnncggcgttacgattttgttcgc |
315 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
36087064 |
gagtatcaactggctttttataatttgtttgctctaaggaagtttcatgatcagtaactct---ttcttcttcttcttccggcgttacgattttgttcgc |
36087160 |
T |
|
| Q |
316 |
aaccacactaattgaaacaacttttctctttttgaagaattttctttctagagaaaaatatttgcccttgaatgcacatcgaacctcttttc |
407 |
Q |
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| T |
36087161 |
aaccacactaactgaaacaacttttctctttttgaagaattttctttctagagagaaatattttcccttgactgcacatcgaacctcttttc |
36087252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 31 - 261
Target Start/End: Original strand, 36090421 - 36090651
Alignment:
| Q |
31 |
ataataacaattgtaggaaactccaatgagcttgtgaaaatcatacatagaatctatgttctcactaaaacgagcagtgttttgaatttgctcaagcttg |
130 |
Q |
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|||| ||||| || |||||||||| ||||||||||||| ||||| ||||||||| ||||| |||||||||| ||||||||||| |||||||||||| ||| |
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| T |
36090421 |
ataacaacaaatgaaggaaactcccatgagcttgtgaatatcatgcatagaatccatgttttcactaaaacaagcagtgtttttaatttgctcaagtttg |
36090520 |
T |
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| Q |
131 |
agtcgaacgacttctctttcactttgtatattcttcctttgtctccaattagtcaaaatcttcttcacttcttgatgatcgataagagaatcaactgatt |
230 |
Q |
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|||||| || ||||||||||| ||||| |||||||| || |||||| ||||| |||||||||||| |||| |||||||| |||| || ||| |||||| |
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| T |
36090521 |
agtcgagcggcttctctttcaatttgtgtattcttcattcgtctccgattagccaaaatcttcttagcttcatgatgatcaataaaagtgtcagctgatt |
36090620 |
T |
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| Q |
231 |
ttttataatttgtttgctctaaggaagtttc |
261 |
Q |
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|||||||||| ||||||||| | |||||||| |
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| T |
36090621 |
ttttataattcgtttgctctgatgaagtttc |
36090651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 97 - 268
Target Start/End: Original strand, 36082178 - 36082350
Alignment:
| Q |
97 |
aaaacgagcagtgtttt-gaatttgctcaagcttgagtcgaacgacttctctttcactttgtatattcttcctttgtctccaattagtcaaaatcttctt |
195 |
Q |
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||||||||| ||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36082178 |
aaaacgagctgtgtttttgaatttgctcaagtttgagtcgagcgacttctctttcactttgtatattcttcctttgtctccaattaaccaaaatcttctt |
36082277 |
T |
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| Q |
196 |
cacttcttgatgatcgataagagaatcaactgattttttataatttgtttgctctaaggaagtttcatgatca |
268 |
Q |
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||||| ||||||||||||| || ||| || ||||||||||||||||||||||||| |||||||| |||||| |
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| T |
36082278 |
cactttatgatgatcgataaaagtttcagcttattttttataatttgtttgctctaatgaagtttcctgatca |
36082350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 321 - 407
Target Start/End: Original strand, 36082403 - 36082489
Alignment:
| Q |
321 |
cactaattgaaacaacttttctctttttgaagaattttctttctagagaaaaatatttgcccttgaatgcacatcgaacctcttttc |
407 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
36082403 |
cactaattgaaacaacttttctctttttgaagcactttctttctagagaaaaagatttgcccttgactgcacatcgaacctcttttc |
36082489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 316 - 407
Target Start/End: Original strand, 36090688 - 36090779
Alignment:
| Q |
316 |
aaccacactaattgaaacaacttttctctttttgaagaattttctttctagagaaaaatatttgcccttgaatgcacatcgaacctcttttc |
407 |
Q |
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|||| |||||||| |||||||||||||||||||||| || |||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
36090688 |
aaccgcactaattaaaacaacttttctctttttgaaacatgttctttctagagaaaataatttgcccttgagtgcacatcgaacctcttttc |
36090779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 17434790 - 17434852
Alignment:
| Q |
52 |
tccaatgagcttgtgaaaatcatacatagaatctatgttctcactaaaacgagcagtgttttg |
114 |
Q |
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||||||||| ||||||||||||| ||||| ||| ||||| ||||| |||||||| |||||||| |
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| T |
17434790 |
tccaatgagtttgtgaaaatcatgcatagcatccatgttgtcactgaaacgagcggtgttttg |
17434852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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