View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8042_low_2 (Length: 328)

Name: NF8042_low_2
Description: NF8042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8042_low_2
NF8042_low_2
[»] chr7 (1 HSPs)
chr7 (14-123)||(36471258-36471367)
[»] chr2 (1 HSPs)
chr2 (122-185)||(11523889-11523952)
[»] chr5 (2 HSPs)
chr5 (123-195)||(9363275-9363346)
chr5 (224-269)||(9363217-9363262)
[»] chr4 (4 HSPs)
chr4 (121-225)||(14079936-14080039)
chr4 (123-224)||(14079537-14079637)
chr4 (123-217)||(42289254-42289347)
chr4 (121-225)||(818491-818594)
[»] scaffold0542 (1 HSPs)
scaffold0542 (124-185)||(9754-9815)
[»] chr3 (4 HSPs)
chr3 (124-225)||(6776252-6776352)
chr3 (127-191)||(4997617-4997681)
chr3 (123-195)||(44541426-44541496)
chr3 (121-185)||(44542014-44542078)


Alignment Details
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 36471367 - 36471258
Alignment:
Q  14 gaacaaacatacatgcacgaaaaatccatctaaatagtagtaattataaataaaataagactacaaaataatatgttgtaaccacattacaatattcaat 113  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36471367 gaacaaaaatacatgcacgaaaaatccatctaaatagtagtaattataaataaaataagactacaaaataatatgttgtaaccacattacaatattcact 36471268  T
Q  114 ataaataaaa 123  Q
    ||||||||||    
T  36471267 ataaataaaa 36471258  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 11523889 - 11523952
Alignment:
Q  122 aagagtttaattgaaatgctctgacagtgtaaagctcactttacacggtcatccaatagaattc 185  Q
    ||||||||||||| | ||||||||||||||||||  |||||||||| |||||||||||||||||    
T  11523889 aagagtttaattgtagtgctctgacagtgtaaagtgcactttacactgtcatccaatagaattc 11523952  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 9363346 - 9363275
Alignment:
Q  123 agagtttaattgaaatgctctgacagtgtaaagctcactttacacggtcatccaatagaattctgccacatca 195  Q
    |||||||||||| | |||||||||||||||||   |||||||||| |||||||||||||||| ||||||||||    
T  9363346 agagtttaattgtagtgctctgacagtgtaaatg-cactttacacagtcatccaatagaattttgccacatca 9363275  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 9363262 - 9363217
Alignment:
Q  224 ttgaattaattaattctgaaaatcatctttctcacttctcagttct 269  Q
    |||||||||||||||| ||||| |||| ||||||||||||| ||||    
T  9363262 ttgaattaattaattcagaaaaacatcattctcacttctcaattct 9363217  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 225
Target Start/End: Complemental strand, 14080039 - 14079936
Alignment:
Q  121 aaagagtttaattgaaatgctctgacagtgtaaagctcactttacacggtcatccaatagaattctgccacatcacaccctcatttaaaataggttaatt 220  Q
    |||||| ||||||| |||  ||||||||||||||  ||||||||||| ||||  |||||||||||||||||||||    | | ||||||||| |||||||    
T  14080039 aaagagattaattggaataatctgacagtgtaaaa-tcactttacactgtcaaacaatagaattctgccacatcatgttcacttttaaaatatgttaatt 14079941  T
Q  221 gaatt 225  Q
    |||||    
T  14079940 gaatt 14079936  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 14079537 - 14079637
Alignment:
Q  123 agagtttaattgaaatgctctgacagtgtaaagctcactttacacggtcatccaatagaattctgccacatcacaccctcatttaaaataggttaattga 222  Q
    |||| ||||||  ||| |||||||||||||||  || |||||||| |||| ||||||||||| |||||||||  | | || ||||||||| |||||||||    
T  14079537 agagattaattagaatactctgacagtgtaaaa-tccctttacactgtcaaccaatagaattatgccacatcgtatcatcttttaaaatatgttaattga 14079635  T
Q  223 at 224  Q
    ||    
T  14079636 at 14079637  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 217
Target Start/End: Original strand, 42289254 - 42289347
Alignment:
Q  123 agagtttaattgaaatgctctgacagtgtaaagctcactttacacggtcatccaatagaattctgccacatcacaccctcatttaaaataggtta 217  Q
    |||||||||||| | |||||||||||||||||   ||||||||||  |||||||||| ||||| | |||| || |||||| || |||||| ||||    
T  42289254 agagtttaattgtagtgctctgacagtgtaaa-tgcactttacacaatcatccaataaaattccgtcacaccataccctctttcaaaatatgtta 42289347  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 225
Target Start/End: Complemental strand, 818594 - 818491
Alignment:
Q  121 aaagagtttaattgaaatgctctgacagtgtaaagctcactttacacggtcatccaatagaattctgccacatcacaccctcatttaaaataggttaatt 220  Q
    |||||||||||||| | |||  ||||||||||||| | | ||||||| |||||||||||  | | ||||||||||    |||||||||||| ||||||||    
T  818594 aaagagtttaattgtagtgcattgacagtgtaaagat-agtttacacagtcatccaataacaatttgccacatcatcttctcatttaaaattggttaatt 818496  T
Q  221 gaatt 225  Q
     ||||    
T  818495 taatt 818491  T

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Target: scaffold0542 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 9754 - 9815
Alignment:
Q  124 gagtttaattgaaatgctctgacagtgtaaagctcactttacacggtcatccaatagaattc 185  Q
    ||||||||||| | ||||||||||||||||||   ||||||||| ||||||||||| |||||    
T  9754 gagtttaattggagtgctctgacagtgtaaagtatactttacactgtcatccaataaaattc 9815  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 225
Target Start/End: Complemental strand, 6776352 - 6776252
Alignment:
Q  124 gagtttaattgaaatgctctgacagtgtaaagctcactttacacggtcatccaatagaattctgccacatcacaccctcatttaaaataggttaattgaa 223  Q
    ||||||||||| | ||| |||||||||||||| | | ||||||| |||||||||||  | ||||||||||||    |||||||||||| |||||||| ||    
T  6776352 gagtttaattgtagtgcactgacagtgtaaagat-agtttacacagtcatccaataacaatctgccacatcatcttctcatttaaaattggttaatttaa 6776254  T
Q  224 tt 225  Q
    ||    
T  6776253 tt 6776252  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 4997681 - 4997617
Alignment:
Q  127 tttaattgaaatgctctgacagtgtaaagctcactttacacggtcatccaatagaattctgccac 191  Q
    |||||||| | ||||||| ||||||||||   ||||||||||||||||||||| ||||| |||||    
T  4997681 tttaattggagtgctctgtcagtgtaaagtatactttacacggtcatccaataaaattcagccac 4997617  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 44541426 - 44541496
Alignment:
Q  123 agagtttaattgaaatgctctgacagtgtaaagctcactttacacggtcatccaatagaattctgccacatca 195  Q
    |||||||||||| | ||||||||||| |||||   |||||||||| |||||||||||||||| ||||||||||    
T  44541426 agagtttaattgtagtgctctgacag-gtaaatg-cactttacacagtcatccaatagaattttgccacatca 44541496  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 44542078 - 44542014
Alignment:
Q  121 aaagagtttaattgaaatgctctgacagtgtaaagctcactttacacggtcatccaatagaattc 185  Q
    |||||||||||||| | ||||||||||||||||||   | ||||||| ||||||||||| |||||    
T  44542078 aaagagtttaattggagtgctctgacagtgtaaagtatattttacactgtcatccaataaaattc 44542014  T

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