View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8042_low_4 (Length: 262)
Name: NF8042_low_4
Description: NF8042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8042_low_4 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 36092616 - 36092876
Alignment:
| Q |
1 |
cccaagaccatcacctatcatttgaagaaccctaataaatacattgaaataaaaaagatgaatagaaagcttaggaaacttggccaaaacctaagaaaac |
100 |
Q |
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| T |
36092616 |
cccaagaccattacctatcatttgaagaaccctaataaatacattgaaataaaaaagatgaatagaaagcttagaaaacttggccaaaacctaagaaaac |
36092715 |
T |
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| Q |
101 |
aaacaacaactacatcgataaaaacttaatatgacaaaattaaaccatattgaagaggaaaatagtgtagtgcgataaaacaagagttaattgcaaatat |
200 |
Q |
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| T |
36092716 |
aaacaacaactacatcgataaaaacttaacatgacaaaattaaaccatattgaagatgaaaatagtgtagtgcaataaaacaagagttaattacaaatat |
36092815 |
T |
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| Q |
201 |
catgacaaacaaagcctaaactcaataaggcagtatctattaagaaaaaagtattctctaat |
262 |
Q |
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| T |
36092816 |
catgacaaacaaagcctaaactcaataaggtagtatctattaag-aaaaagtattatctaat |
36092876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 36090106 - 36090333
Alignment:
| Q |
1 |
cccaagaccatcacctatcatttgaagaaccctaataaatacattgaaataaaaaagatgaatagaaagcttaggaaacttggccaaaacctaagaaaac |
100 |
Q |
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| T |
36090106 |
cccaaggccatcatctatcatatggagaaccctaataaatt-attgaaataaaa-agatgaatagaaggcttagaaaacttggccaaaccctaagaaaac |
36090203 |
T |
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| Q |
101 |
aaacaacaactacatcgataaaaacttaatatgacaaaattaaaccatattgaagaggaaaatagtgtagtgcgataaaacaagagttaat---tgcaaa |
197 |
Q |
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| T |
36090204 |
aaacaacaactgcatcgataaaaacttaataggacaaagtaaaaccataatgaatagaagaagagtgtagtgcaagaaaacagcaattaattagtacaaa |
36090303 |
T |
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| Q |
198 |
tatcatgacaaacaaagcctaaactcaata |
227 |
Q |
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| T |
36090304 |
tatcatgacaaacaaagcctaaactcaata |
36090333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 36086512 - 36086654
Alignment:
| Q |
1 |
cccaagaccatcacctatcatttgaagaaccctaataaatacattgaaataaaaaagatgaatagaaagcttaggaaacttggccaaaacctaagaaaac |
100 |
Q |
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|||||| |||||| ||||||| || |||||||||||||||| |||| ||||||| |||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
36086512 |
cccaaggccatcatctatcatatggagaaccctaataaatatattggaataaaa-agatgaatagaaggcttagaaaacttggccaaaacctaagaaaac |
36086610 |
T |
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| Q |
101 |
aaacaacaactacatcgataaaaacttaatatgacaaaattaaaccata |
149 |
Q |
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| T |
36086611 |
aaacaacaact-----gataaaaacttaataggacaaagtaaaaccata |
36086654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 36086821 - 36086883
Alignment:
| Q |
200 |
tcatgacaaacaaagcctaaactcaataaggcagtatctattaagaaaaaagtattctctaat |
262 |
Q |
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||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
36086821 |
tcatgacaaacaaagcctaaactcaataaggcaatatcaattaagaaaaaagtattctctaat |
36086883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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