View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8043_high_1 (Length: 511)
Name: NF8043_high_1
Description: NF8043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8043_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 16 - 495
Target Start/End: Complemental strand, 4235274 - 4234795
Alignment:
| Q |
16 |
acatcatataatttaatcctgtatgttaatttttcttataaagttggcttttgggtgtaatctcgtaaacaataaacaaattaagtgcatggttgttaat |
115 |
Q |
| |
|
||||| |||||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4235274 |
acatcgtataatttgatcatgtatgttaatttttcctatgaagttggcttttgggtgtaatctcgtaaacaataaacaaattaagtgtccggttgttaat |
4235175 |
T |
|
| Q |
116 |
taagttggttagacaatatgtgactgaaaattgtattttgtatttgggacttggatagagtcccgccaacaattcatgttgacattatcaacaagattat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4235174 |
taagttggttagacaatatgtgactgaaaattgtattttgtatttgagacttggatagagtcccgccaacaattcatgttgacattatcaacaagattat |
4235075 |
T |
|
| Q |
216 |
aagttcgtgtgtttctacgtctctatgtagtactgatcttcttcttataagatttctcgtcgagttgaactaatccagaaatgctgggtgtgtttctttt |
315 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4235074 |
aagttcgtgtgtttctacatctctatgtagtactgatcttcttcttataagatttctcgtcaagttgaactaatccagaaatgctgggtgtgtttctttt |
4234975 |
T |
|
| Q |
316 |
agtggttgtatcacgacgaatgacagaagaagctattggaggtgacagttgatgcgtcgtatttaatgtgcagtgtgtcgatggaaactatatgttgtgc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4234974 |
agtggttgtatcacgacgaatgacagaagaagctattggaggtgacaattgatgcgtcgtatttaatgtgcagtgtgtcgatggaaactatatgttgtgc |
4234875 |
T |
|
| Q |
416 |
tttttgtgatggtgctccagcgtcaaagatttgggtgatgattgaaggcgttttgcctcattctttttggaggctgatgt |
495 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4234874 |
tttttgtgatggtgctccggcgtcaaagatttgggtgatgattgaaggcgttttgcctcattctttttggaggctgatgt |
4234795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University