View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8043_high_3 (Length: 451)
Name: NF8043_high_3
Description: NF8043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8043_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 54216896 - 54217331
Alignment:
| Q |
1 |
tataactagaatggcactcgacatacaagaaagacatgcagtagtgcaggggatacctcttgtacaagtctctgacaagtatttttggtttgaatggcct |
100 |
Q |
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| T |
54216896 |
tataactagaatggcactcgacatacaagaaagacatgcagtagtgcaggggatacctcttgtacaagtctctgacaagtatttttggtttgaatggcct |
54216995 |
T |
|
| Q |
101 |
caactagttctttatctcctccattatgtcctctttcaggtatttgattcttcttctatttaaaacagtctttttcaatgaatattagaatgatttctta |
200 |
Q |
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| T |
54216996 |
caattagttctttatctcctccattatgtcctctttcaggtatttgattcttcttctatttaaaacagtctttttcaatgaatattagaatgatttctta |
54217095 |
T |
|
| Q |
201 |
taatttgatcatttgctttacatgttcagaatgcatttgagctgacctttttctggtggacatgggtaatatgttatattcagttgatattgttttcttc |
300 |
Q |
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| T |
54217096 |
taatttgatcatttgctttacatgttcagaatgcatttgagctgacctttttctggtggacatgggtaatatgttatattcagttgatattgttttcttc |
54217195 |
T |
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| Q |
301 |
ttatgattttgcatttgcttcttgaaccttaaaaacacttcattttggtgcagtatgaatttgggtgggcatcttgcttttatgaagatgacagtcttat |
400 |
Q |
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| T |
54217196 |
ttatgattttgcatttgcttcttgaaccttaaaaacacttcattttggtgcagtatgaatttgggtgggcatcttgcttttatgaagatgacagtcttat |
54217295 |
T |
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| Q |
401 |
gattgttagagttgctcttgggtaagcagattgttt |
436 |
Q |
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| T |
54217296 |
gattgttagagttgctcttgggtaagcagattgttt |
54217331 |
T |
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