View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8043_low_11 (Length: 269)
Name: NF8043_low_11
Description: NF8043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8043_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 45467737 - 45467988
Alignment:
| Q |
1 |
atgaaagtgattaaatataactacatttgttgttgtgccatacattgaaccaaacacaccttcaatttaaagtattggtgctgaataggtatttaggagg |
100 |
Q |
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| T |
45467737 |
atgaaagtgattaaatataactacatttgttgttgtgccatacattgaaccaaacacaccttcaatttaaagtattggtgctgaataggtatttaggagg |
45467836 |
T |
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| Q |
101 |
tctattttgtgtaggtggggcttggggagtgtcagggtttcactggttggagttaatttataggtgattttgagggagtgttaaaatgcatttcggtatg |
200 |
Q |
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| T |
45467837 |
tctattttgtgtaggtggggcttggggagtgtcagggtttcactgattggagttaatttataggtgattttgagggagtgttaaaatgcatttcggtatg |
45467936 |
T |
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| Q |
201 |
aataagtgttatgcagttatgaagggatgtttgatttatctagatagatgtt |
252 |
Q |
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| T |
45467937 |
aataagtgttatgcagttatgaagggatgtttgatttatctagatagatgtt |
45467988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 25734654 - 25734516
Alignment:
| Q |
1 |
atgaaagtgattaaatataactacatttgttg---ttgtgccatacattgaaccaaacacaccttcaatttaaagtattggtgctgaataggtatttagg |
97 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25734654 |
atgaaagtgattaaatataactacatttgttggtgttgtgccatacattgaaccaaacacaccttcaatttaaagtattggtgctgcataggtatttagg |
25734555 |
T |
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| Q |
98 |
aggtctattttgtgtaggtggggcttggggagtgtcagg |
136 |
Q |
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| T |
25734554 |
gggtctattttgtgttggtggggcttggggagtgtcagg |
25734516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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