View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8043_low_12 (Length: 259)
Name: NF8043_low_12
Description: NF8043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8043_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 46627062 - 46626870
Alignment:
| Q |
9 |
agcagagaccaaatagaaagaatattgatgacaatatatgttgtaagtaattaacatttttgaacaaaataccaatatccaagattccaagtcaatgcaa |
108 |
Q |
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| T |
46627062 |
agcaaagaccaaatagaaagaatattgatgacaatatatgttgtaagtaattatcatttttgaacaaaataccaatatccaagattccaagtcaatgcaa |
46626963 |
T |
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| Q |
109 |
tgcaattaatttcacacaatcaaaatacgagatgtgtatatcacaattcacaactaatggtgcattttacgtaaaaagataaataaataataaaacca |
206 |
Q |
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| T |
46626962 |
t-----taatttcacacaatcaaaatacgagatgtgtatatcacaattcacaactaatggtgcattttacgtaaaaagataaataaataataaaacca |
46626870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 120 - 226
Target Start/End: Complemental strand, 46640993 - 46640888
Alignment:
| Q |
120 |
tcacacaatcaaaatacgagatgtgtatatcacaattcacaactaatggtgcattttacgtaaaaagataaataaataataaaaccaatggttcatacat |
219 |
Q |
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| T |
46640993 |
tcacgcaatcaaaataccagatgtgtatatcacaagtcacaactaatggtacatttt-cgtaaaaagataaataaataataaaactaatgatacatacat |
46640895 |
T |
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| Q |
220 |
cttcacg |
226 |
Q |
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| T |
46640894 |
cttcacg |
46640888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 239
Target Start/End: Original strand, 18380165 - 18380346
Alignment:
| Q |
46 |
atgttgtaagtaattaacatttttgaacaaaataccaatatccaagattccaagtcaatgcaatgcaattaatttcacacaatcaaaatacgagatgtgt |
145 |
Q |
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| T |
18380165 |
atgttgtaagtaattatcatttttgaacaaaataccaatatccaagt-------------caatgcaattaatttcacacaatcaaaataccagatgtgt |
18380251 |
T |
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| Q |
146 |
-------atatcacaattcacaactaatggtgcattttacgtaaaaagataaataaataataaaaccaatggttcatacatcttcacgttacaatcaagt |
238 |
Q |
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| T |
18380252 |
tatgtgtatatcacaattcacaact--ttctaaaagatacataaa----taaataaataataaaaccaatggtgcatacatcttcacgttacagtcaagt |
18380345 |
T |
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