View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8043_low_13 (Length: 257)

Name: NF8043_low_13
Description: NF8043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8043_low_13
NF8043_low_13
[»] scaffold0053 (1 HSPs)
scaffold0053 (1-243)||(30891-31151)
[»] chr7 (11 HSPs)
chr7 (1-183)||(42080830-42081012)
chr7 (1-123)||(45406697-45406820)
chr7 (174-243)||(42081029-42081098)
chr7 (45-94)||(22528934-22528983)
chr7 (59-151)||(38788964-38789060)
chr7 (45-123)||(4120013-4120091)
chr7 (52-155)||(17474750-17474857)
chr7 (52-155)||(17510234-17510341)
chr7 (52-155)||(17542873-17542980)
chr7 (52-155)||(17578357-17578464)
chr7 (19-123)||(43989682-43989786)
[»] chr3 (7 HSPs)
chr3 (1-130)||(431961-432091)
chr3 (7-123)||(20934967-20935083)
chr3 (45-123)||(50331967-50332045)
chr3 (20-94)||(32970441-32970516)
chr3 (7-123)||(17764121-17764237)
chr3 (7-123)||(19065441-19065557)
chr3 (59-123)||(42400405-42400469)
[»] chr4 (7 HSPs)
chr4 (1-155)||(42757545-42757701)
chr4 (45-153)||(13228658-13228770)
chr4 (45-123)||(50158188-50158266)
chr4 (104-151)||(35308158-35308209)
chr4 (57-122)||(24183445-24183510)
chr4 (52-89)||(39976693-39976730)
chr4 (59-123)||(28475656-28475720)
[»] scaffold1315 (1 HSPs)
scaffold1315 (1-144)||(489-634)
[»] scaffold1293 (1 HSPs)
scaffold1293 (1-144)||(1437-1582)
[»] chr2 (6 HSPs)
chr2 (1-152)||(6466121-6466269)
chr2 (1-153)||(3395416-3395573)
chr2 (45-108)||(36727642-36727705)
chr2 (82-129)||(30637861-30637908)
chr2 (1-121)||(36720068-36720189)
chr2 (59-123)||(19040697-19040761)
[»] chr8 (3 HSPs)
chr8 (1-146)||(18953315-18953464)
chr8 (46-123)||(10901452-10901529)
chr8 (52-89)||(21587045-21587082)
[»] chr6 (3 HSPs)
chr6 (54-108)||(31737233-31737287)
chr6 (45-123)||(1599682-1599760)
chr6 (59-123)||(7428507-7428571)
[»] chr5 (2 HSPs)
chr5 (6-123)||(9012683-9012801)
chr5 (1-119)||(38015896-38016015)
[»] chr1 (5 HSPs)
chr1 (45-146)||(43387108-43387213)
chr1 (53-123)||(22636335-22636405)
chr1 (7-123)||(20306703-20306819)
chr1 (61-151)||(16851931-16852024)
chr1 (59-123)||(40946519-40946583)
[»] scaffold0051 (1 HSPs)
scaffold0051 (50-91)||(19051-19092)
[»] scaffold1750 (1 HSPs)
scaffold1750 (47-123)||(295-370)
[»] scaffold1345 (1 HSPs)
scaffold1345 (47-123)||(1848-1923)


Alignment Details
Target: scaffold0053 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 31151 - 30891
Alignment:
Q  1 ttcacccaaagtcctaaagcattaggtatatggataatctcctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151 ttcacccaaagtcctaaagcattaggtatatggataatctcctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactga 31052  T
Q  101 cacattaatatctctccattaagagactcttcgtgtctgtgatccatcaccaagacccgccgccctccacaacc------------------acacacac 182  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||    
T  31051 caaattaatatctctccattaagagactcttcgtgtctgtgatccatcaccaagacccgccgccctccacaaccacacccacacagacacacacacacac 30952  T
Q  183 agaatgttgaaccgagatgtgataccactgttggctcttatatgtaagtcaacattgatgt 243  Q
    | |||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||    
T  30951 acaatgttgaaccgagatgtgataccaccgttggctcttatatgcaagtcaacaatgatgt 30891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 42080830 - 42081012
Alignment:
Q  1 ttcacccaaagtcctaaagcattaggtatatggataatctcctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42080830 ttcacccaaagtcctaaagcattaggtatatggataatctcctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactga 42080929  T
Q  101 cacattaatatctctccattaagagactcttcgtgtctgtgatccatcaccaagacccgccgccctccacaaccacacacaca 183  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| ||||    
T  42080930 cacattaatatctctccattaagagactcttcgtatatgtgatccatcaccaagacctgccgccctccacaaccacacccaca 42081012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 45406820 - 45406697
Alignment:
Q  1 ttcacccaaagtcctaaagcattaggtatatggataatctcc-tcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactg 99  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||||| | ||    
T  45406820 ttcaaccaaagtcctaaagcattaggtatatggataatctccctcatatgtttctcaacatctcctcttacatcaaatgtcaaattttaactcacaattg 45406721  T
Q  100 acacattaatatctctccattaag 123  Q
    ||||||||| || |||||||||||    
T  45406720 acacattaacatttctccattaag 45406697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 42081029 - 42081098
Alignment:
Q  174 cacacacacagaatgttgaaccgagatgtgataccactgttggctcttatatgtaagtcaacattgatgt 243  Q
    |||||||||| |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||    
T  42081029 cacacacacacaatgttgaaccgagatgtgataccaccgttgggtcttatatgcaagtcaacattgatgt 42081098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 22528983 - 22528934
Alignment:
Q  45 atatgtttctcaacatctactcttgcatctaatgtcaaattttaactcac 94  Q
    |||||||||||||||| |||||||||||  ||||| ||||||||||||||    
T  22528983 atatgtttctcaacatttactcttgcatacaatgtaaaattttaactcac 22528934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 38788964 - 38789060
Alignment:
Q  59 atctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag----agactcttcgtgtctgtgatccatcacc 151  Q
    ||||||||||||||  ||||| ||||||||||| ||   | ||||||||| ||||||||||||||    ||||||| ||||| ||||||||| ||||    
T  38788964 atctactcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctccattaagtgtcagactctccgtgtttgtgatccaccacc 38789060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 4120013 - 4120091
Alignment:
Q  45 atatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 123  Q
    ||||||| ||||||||| ||| ||| ||| ||||| ||||||||||| ||   |||||| ||| |||||||||||||||    
T  4120013 atatgttgctcaacatccacttttgaatccaatgtgaaattttaactaacacttgacacgttagtatctctccattaag 4120091  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 17474750 - 17474857
Alignment:
Q  52 tctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag----agactcttcgtgtctgtgatccat 147  Q
    ||||||||||||||||| |||  ||||| ||| |||||||||    ||||||||||| ||||||||| ||||    |||||||| ||| |||||||| |     
T  17474750 tctcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgac 17474849  T
Q  148 caccaaga 155  Q
    ||||||||    
T  17474850 caccaaga 17474857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 17510234 - 17510341
Alignment:
Q  52 tctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag----agactcttcgtgtctgtgatccat 147  Q
    ||||||||||||||||| |||  ||||| ||| |||||||||    ||||||||||| ||||||||| ||||    |||||||| ||| |||||||| |     
T  17510234 tctcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgac 17510333  T
Q  148 caccaaga 155  Q
    ||||||||    
T  17510334 caccaaga 17510341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 17542980 - 17542873
Alignment:
Q  52 tctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag----agactcttcgtgtctgtgatccat 147  Q
    ||||||||||||||||| |||  ||||| ||| |||||||||    ||||||||||| ||||||||| ||||    |||||||| ||| |||||||| |     
T  17542980 tctcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgac 17542881  T
Q  148 caccaaga 155  Q
    ||||||||    
T  17542880 caccaaga 17542873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 17578464 - 17578357
Alignment:
Q  52 tctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag----agactcttcgtgtctgtgatccat 147  Q
    ||||||||||||||||| |||  ||||| ||| |||||||||    ||||||||||| ||||||||| ||||    |||||||| ||| |||||||| |     
T  17578464 tctcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgac 17578365  T
Q  148 caccaaga 155  Q
    ||||||||    
T  17578364 caccaaga 17578357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 43989786 - 43989682
Alignment:
Q  19 gcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctcc 117  Q
    |||||| ||||||| || ||||| || | |||||||||| |||||||| ||||||  ||| | ||||||||||||||   ||||||||||| |||||||     
T  43989786 gcattatgtatatgaatcatctcacttaaatgtttctca-catctactattgcatacaatataaaattttaactcacacttgacacattaacatctctca 43989688  T
Q  118 attaag 123  Q
    ||||||    
T  43989687 attaag 43989682  T

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Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 432091 - 431961
Alignment:
Q  1 ttcacccaaagtcctaaagcattaggtatatggataatct-cctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactg 99  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||| |||||| ||||||||||||| | ||    
T  432091 ttcacccaaagtcctaaagcattagttatatggataatcttcctcatatgtttctcaacatatactcttgcatccaatgtcgaattttaactcacaattg 431992  T
Q  100 acacattaatatctctccattaagagactct 130  Q
    |||||||||||||||||||||||||||||||    
T  431991 acacattaatatctctccattaagagactct 431961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 20934967 - 20935083
Alignment:
Q  7 caaagtcctaaagcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacat 105  Q
    |||||||| ||||||||| |||||||  | ||||| || | |||||||||| |||||||| ||||||  ||| | ||||||||||||||  |||||||||    
T  20934967 caaagtccgaaagcattatgtatatgagtcatctcacttaaatgtttctca-catctactattgcatacaatataaaattttaactcacacctgacacat 20935065  T
Q  106 taatatctctccattaag 123  Q
    ||| ||||||||||||||    
T  20935066 taacatctctccattaag 20935083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 50331967 - 50332045
Alignment:
Q  45 atatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 123  Q
    ||||||||||||||||||||| ||||||  |||||   ||||||||||||   ||||||||||| ||||||| ||||||    
T  50331967 atatgtttctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctctattaag 50332045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 32970441 - 32970516
Alignment:
Q  20 cattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcac 94  Q
    |||||||||||||| | ||||| || |||| ||| ||| |||||||||||||||||||||| ||| ||| ||||||    
T  32970441 cattaggtatatgggtcatctcacttatatatttttcagcatctactcttgcatctaatgtgaaactttcactcac 32970516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 17764237 - 17764121
Alignment:
Q  7 caaagtcctaaagcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacat 105  Q
    ||||||| |||||||||| |||||||  ||||||| || ||||||| |||| ||| |||||| || |  |||||  |||||||||||||   || |||||    
T  17764237 caaagtcttaaagcattatgtatatgagtaatctcacttatatgttgctca-catatactctggcttacaatgtggaattttaactcacacttgtcacat 17764139  T
Q  106 taatatctctccattaag 123  Q
    ||| ||||||||||||||    
T  17764138 taacatctctccattaag 17764121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 19065557 - 19065441
Alignment:
Q  7 caaagtcctaaagcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacat 105  Q
    ||||||| |||||||||| |||||||  ||||||| || ||||||| |||| ||| |||||| || |  |||||  |||||||||||||   || |||||    
T  19065557 caaagtcttaaagcattatgtatatgagtaatctcacttatatgttgctca-catatactctggcttacaatgtggaattttaactcacacttgtcacat 19065459  T
Q  106 taatatctctccattaag 123  Q
    ||| ||||||||||||||    
T  19065458 taacatctctccattaag 19065441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 42400405 - 42400469
Alignment:
Q  59 atctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 123  Q
    ||||||| ||||||  ||| | ||||||||||||||   ||||||||||| ||||||||||||||    
T  42400405 atctactattgcatacaatataaaattttaactcacacgtgacacattaacatctctccattaag 42400469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 42757545 - 42757701
Alignment:
Q  1 ttcacccaaagtcctaaagcattaggtatatggataatctcc-tcatatgtttctcaacatctactcttgcatct--aatgtcaaattttaactcacgac 97  Q
    |||||||||||||||||  ||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| |  ||||| ||| ||| |||||| |     
T  42757545 ttcacccaaagtcctaagacattaggtatatg-ataatctccctcatatgtttttcaacatctactcttgcatatccaatgttaaacttttactcacaat 42757643  T
Q  98 tgacacattaatatctctccattaagagactcttcgtgtctgtgatccatcaccaaga 155  Q
    ||||||||||| ||||||| ||||||||||||| ||||||||||||||| ||||||||    
T  42757644 tgacacattaacatctctctattaagagactctccgtgtctgtgatccaccaccaaga 42757701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 13228770 - 13228658
Alignment:
Q  45 atatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaa----gagactcttcgtgtctgt 140  Q
    ||||||||||||||||||||| ||||||  |||||   ||||||||||||   ||||||||||| |||||||||||||    |||||| || |||||||     
T  13228770 atatgtttctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctccattaagtatgagactttttgtgtctgc 13228671  T
Q  141 gatccatcaccaa 153  Q
    |||||| ||||||    
T  13228670 gatccaccaccaa 13228658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 50158266 - 50158188
Alignment:
Q  45 atatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 123  Q
    ||||||| |||||||| |||||||||||  ||||| ||| |||||||||    ||||||||||| ||||||||||||||    
T  50158266 atatgttgctcaacatatactcttgcataaaatgtgaaactttaactcatacttgacacattaacatctctccattaag 50158188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 35308209 - 35308158
Alignment:
Q  104 attaatatctctccattaag----agactcttcgtgtctgtgatccatcacc 151  Q
    ||||||||||||||||||||    ||||||||||||||||||||||| ||||    
T  35308209 attaatatctctccattaagtgtcagactcttcgtgtctgtgatccaccacc 35308158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 24183445 - 24183510
Alignment:
Q  57 acatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaa 122  Q
    ||||||||||||||||  ||||| ||||||||||| ||   | ||||||||| |||||||||||||    
T  24183445 acatctactcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctccattaa 24183510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 39976730 - 39976693
Alignment:
Q  52 tctcaacatctactcttgcatctaatgtcaaattttaa 89  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  39976730 tctcaacatctactcttgcatctaatgtgaaaatttaa 39976693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 28475656 - 28475720
Alignment:
Q  59 atctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 123  Q
    ||||||||||||||  ||||| ||||||||||| ||   | ||||||||| ||||||||||||||    
T  28475656 atctactcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctccattaag 28475720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 634 - 489
Alignment:
Q  1 ttcacccaaagtcctaaagcattaggtatatggataatctcc-tcatatgtttctcaacatctactcttgcatct--aatgtcaaattttaactcacgac 97  Q
    |||||||||||||||||  ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |  |||||  || ||| ||| || ||    
T  634 ttcacccaaagtcctaagacattaggtatatg-ataatctccctcatatgtttctcaacatctactcttgcatatccaatgttgaacttttacttacaac 536  T
Q  98 tgacacattaatatctctccattaagagactcttcgtgtctgtgatc 144  Q
    ||||||||||| ||||||| ||||||||||||| ||||||| |||||    
T  535 tgacacattaacatctctctattaagagactctccgtgtctatgatc 489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 1437 - 1582
Alignment:
Q  1 ttcacccaaagtcctaaagcattaggtatatggataatctcc-tcatatgtttctcaacatctactcttgcatct--aatgtcaaattttaactcacgac 97  Q
    |||||||||||||||||  ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |  |||||  || ||| ||| || ||    
T  1437 ttcacccaaagtcctaagacattaggtatatg-ataatctccctcatatgtttctcaacatctactcttgcatatccaatgttgaacttttacttacaac 1535  T
Q  98 tgacacattaatatctctccattaagagactcttcgtgtctgtgatc 144  Q
    ||||||||||| ||||||| ||||||||||||| ||||||| |||||    
T  1536 tgacacattaacatctctctattaagagactctccgtgtctatgatc 1582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 6466269 - 6466121
Alignment:
Q  1 ttcacccaaagtcctaaagcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactg 99  Q
    |||||||||| |||||||||||| |||||||| |||||||| |||| |||||| ||||||| |||||||||||| ||||||||||||||| ||||         
T  6466269 ttcacccaaaatcctaaagcattgggtatatgaataatctctctcaaatgtttttcaacatttactcttgcatccaatgtcaaattttaattcac----a 6466174  T
Q  100 acacattaatatctctccattaagagactcttcgtgtctgtgatccatcacca 152  Q
    |||| |||| || ||||||||||||||||||  |||||||||||||| |||||    
T  6466173 acacgttaacatttctccattaagagactctctgtgtctgtgatccaccacca 6466121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 3395416 - 3395573
Alignment:
Q  1 ttcacccaaagtcctaaagcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactg 99  Q
    |||||||||| || |||  |||||| ||||||  | ||||| || ||||||||||||||||||||| ||||||  || ||   ||||||||||||  |||    
T  3395416 ttcacccaaaatcttaagacattagatatatgagtcatctcacttatatgtttctcaacatctactattgcattcaaagtgttattttaactcacacctg 3395515  T
Q  100 acacattaatatctctccattaa----gagactcttcgtgtctgtgatccatcaccaa 153  Q
    ||||||||| |||||||||||||    ||||||||| ||||||| |||||| ||||||    
T  3395516 acacattaacatctctccattaagtatgagactctttgtgtctgcgatccaccaccaa 3395573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 36727642 - 36727705
Alignment:
Q  45 atatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaa 108  Q
    |||||||||| |||||||||| ||||||||||||| ||||||||| |||| | |||||||||||    
T  36727642 atatgtttcttaacatctacttttgcatctaatgtgaaattttaagtcacaattgacacattaa 36727705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 30637861 - 30637908
Alignment:
Q  82 aattttaactcacgactgacacattaatatctctccattaagagactc 129  Q
    ||||||||||||| | ||||||||||||||  ||||||||||||||||    
T  30637861 aattttaactcacaattgacacattaatataactccattaagagactc 30637908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 36720189 - 36720068
Alignment:
Q  1 ttcacccaaagtcctaaagcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactg 99  Q
    ||||||||||||| | |  |||||||||||||||| ||||| || ||||||| |||||||| || | |||||   | |||  |||||||||||||   ||    
T  36720189 ttcacccaaagtcttcagacattaggtatatggatcatctcacttatatgttgctcaacatatattattgcacacattgtagaattttaactcacacttg 36720090  T
Q  100 acacattaatatctctccatta 121  Q
    ||||||||| |||||| |||||    
T  36720089 acacattaacatctcttcatta 36720068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 19040761 - 19040697
Alignment:
Q  59 atctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 123  Q
    ||||||| ||||||  ||| | ||||||||||||||   ||||||||||| ||||||||||||||    
T  19040761 atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaag 19040697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 18953315 - 18953464
Alignment:
Q  1 ttcacccaaagtcctaaagcattaggtatatggataatctcc-tcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactg 99  Q
    |||||||||||||||||||||||| || | || ||||||||| ||| |||||| |||||||||||||||||||| ||||||||||||||| ||||   ||    
T  18953315 ttcacccaaagtcctaaagcattaagtttttgaataatctccctcaaatgtttttcaacatctactcttgcatccaatgtcaaattttaattcacagttg 18953414  T
Q  100 acacattaata---tctctccattaagagactcttcgtgtctgtgatcca 146  Q
    ||||||||| |   | |||||||||| ||| ||| |||||||||||||||    
T  18953415 acacattaacaacctttctccattaatagaatctccgtgtctgtgatcca 18953464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 10901452 - 10901529
Alignment:
Q  46 tatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 123  Q
    |||||| ||||||||||||| ||||||  |||||   ||||||||||||   ||| ||||||| ||||||||||||||    
T  10901452 tatgttactcaacatctactattgcattcaatgtgttattttaactcacatttgatacattaacatctctccattaag 10901529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 21587045 - 21587082
Alignment:
Q  52 tctcaacatctactcttgcatctaatgtcaaattttaa 89  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  21587045 tctcaacatctactcttgcatctaatgtgaaaatttaa 21587082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 31737233 - 31737287
Alignment:
Q  54 tcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaa 108  Q
    |||||||||||||||||||| ||||| |||||||||||||| | |||||||||||    
T  31737233 tcaacatctactcttgcatccaatgtgaaattttaactcacaattgacacattaa 31737287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 1599760 - 1599682
Alignment:
Q  45 atatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 123  Q
    ||||||||||||||||||||| ||||||  |||||   ||||||||||||   ||||||||||| ||||||| ||||||    
T  1599760 atatgtttctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctctattaag 1599682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 7428507 - 7428571
Alignment:
Q  59 atctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 123  Q
    ||||||| ||||||  ||| | ||||||||||||||   ||||||||||| ||||||||||||||    
T  7428507 atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaag 7428571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 9012683 - 9012801
Alignment:
Q  6 ccaaagtcctaaagcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacaca 104  Q
    |||||||||||| |||||| ||||| || | | ||| || ||||||| ||||||||||||||||| ||  | ||| ||||||||||| ||   |||||||    
T  9012683 ccaaagtcctaaggcattatgtataagggtcagctcacttatatgttgctcaacatctactcttgaattcattgtgaaattttaactaacacttgacaca 9012782  T
Q  105 ttaatatctctccattaag 123  Q
    ||||||| |||||||||||    
T  9012783 ttaatatgtctccattaag 9012801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 38015896 - 38016015
Alignment:
Q  1 ttcacccaaagtcctaaagcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactg 99  Q
    |||||||||| || |||  |||||| ||||||  | ||||| || ||||||| ||||||||||||| ||||||  |||||   ||||||||||||   ||    
T  38015896 ttcacccaaaatcttaagtcattagatatatgagtcatctcacttatatgttgctcaacatctactattgcattcaatgtgttattttaactcacacttg 38015995  T
Q  100 acacattaatatctctccat 119  Q
    ||||||||| ||||||||||    
T  38015996 acacattaacatctctccat 38016015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 43387108 - 43387213
Alignment:
Q  45 atatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaa----gagactcttcgtgtctgt 140  Q
    ||||||||||||||||||||| ||||||  |||||  |||||||||||||   ||||||||||| |||||||  ||||    |||||||| ||||||||     
T  43387108 atatgtttctcaacatctactattgcattcaatgtgtaattttaactcacacttgacacattaacatctctctgttaagtacgagactctccgtgtctgc 43387207  T
Q  141 gatcca 146  Q
    ||||||    
T  43387208 gatcca 43387213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 22636335 - 22636405
Alignment:
Q  53 ctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 123  Q
    ||||||||||||||||||||  || |||||||||||||||||   ||| | ||||| ||||||||||||||    
T  22636335 ctcaacatctactcttgcattcaaagtcaaattttaactcacacttgaaaaattaacatctctccattaag 22636405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 20306703 - 20306819
Alignment:
Q  7 caaagtcctaaagcattaggtatatggataatctc-ctcatatgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacat 105  Q
    |||||||  ||||||||| |||||||  | ||||| || | ||||||||||  ||||||| ||||||  ||| | ||||||||||||||   ||||||||    
T  20306703 caaagtctgaaagcattatgtatatgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacttgacacat 20306801  T
Q  106 taatatctctccattaag 123  Q
    ||| ||||||||||||||    
T  20306802 taacatctctccattaag 20306819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 16852024 - 16851931
Alignment:
Q  61 ctactcttgcatctaatgtcaaattttaactcacgactga-cacattaatatctctccattaa---gagactcttcgtgtctgtgatccatcacc 151  Q
    ||||||||||||  ||||| ||||||||||| || ||||| |||||||| |||||||||||||    |||||||||||||  |||||||| ||||    
T  16852024 ctactcttgcatacaatgtgaaattttaacttac-actgaacacattaacatctctccattaaagtcagactcttcgtgttcgtgatccaccacc 16851931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 40946583 - 40946519
Alignment:
Q  59 atctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 123  Q
    ||||||| ||||||  ||| | ||||||||||||||   ||||||||||| ||||||||||||||    
T  40946583 atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaag 40946519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 19092 - 19051
Alignment:
Q  50 tttctcaacatctactcttgcatctaatgtcaaattttaact 91  Q
    ||||||| |||||||||| ||||||||||||||| |||||||    
T  19092 tttctcaccatctactctagcatctaatgtcaaaatttaact 19051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1750 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 295 - 370
Alignment:
Q  47 atgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 123  Q
    |||||||||| |||||||| ||||||  ||| | ||||||||||||||   || |||||||| ||||||||||||||    
T  295 atgtttctca-catctactattgcatacaatataaaattttaactcacacttgccacattaacatctctccattaag 370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1345 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 1923 - 1848
Alignment:
Q  47 atgtttctcaacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccattaag 123  Q
    |||||||||| |||||||| ||||||  ||| | ||||||||||||||   ||||||||||| ||||||| ||||||    
T  1923 atgtttctca-catctactattgcatacaatataaaattttaactcacacttgacacattaacatctctcaattaag 1848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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