View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8043_low_14 (Length: 243)
Name: NF8043_low_14
Description: NF8043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8043_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 19331692 - 19331904
Alignment:
| Q |
12 |
agatgaatatataattaaacacaaaatacacaagaccgatataacnnnnnnnnncactacaaatgggagggaaaaacacccaaaagagccccaataacgg |
111 |
Q |
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| T |
19331692 |
agatgaatatataattaaacacaaaatacacaagatcgatataacaaaaaaaaacactacaaatggaagggaaaaacacacaaaagagccccaataacgg |
19331791 |
T |
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| Q |
112 |
gggatcatccataaataataaacaccacctctacaataaccgacccacccatagagataaatggagggaaattggatggaggggcgatcgagagaagaca |
211 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19331792 |
gggatcatccatatataacaaacaccacctctacaataaccgacccacccatagagataaatggagggaaaccggatggaggggcgatcgagagaagaca |
19331891 |
T |
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| Q |
212 |
tgaggtcaaccag |
224 |
Q |
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||||| ||||||| |
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| T |
19331892 |
tgaggccaaccag |
19331904 |
T |
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