View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8043_low_2 (Length: 585)
Name: NF8043_low_2
Description: NF8043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8043_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 17 - 568
Target Start/End: Complemental strand, 13069405 - 13068861
Alignment:
| Q |
17 |
atatatctctgctgatagttacacgcggtaattttttattgcagaaaatactcgtgcagcctatcctatagagtacataccaaatgcaaagttaccatgt |
116 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13069405 |
atatatctctgctgatagttacatgcggtaattttttattgcagaaaatactcgtgcagcctatcctatagagtacataccaaatgcaaagttaccatgt |
13069306 |
T |
|
| Q |
117 |
gttggacctcatccaaagaatgttattcttttggcatgtgatgcatttggtgtgctaccacctgtgagtaagctaaccctggcgcagaccatgtaccatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13069305 |
gttggacctcatccaaagaatgttattcttttggcatgtgatgcatttggtgtgctaccacctgtgagtaagctaaccctggcgcagaccatgtaccatt |
13069206 |
T |
|
| Q |
217 |
tcatcagtggatatactgctctggtaataaatttcattctcagttctcactaatttttactatttgctaaaccaatgttgcttcagttatatgattctaa |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13069205 |
tcatcagtggatatactgctctggtaataaatttcattctca-------ctaatttttactatttgctaaaccaatgttgcttcagttatatgattctaa |
13069113 |
T |
|
| Q |
317 |
ccatttttatgtaggtggctggtactgaggatggtataaaggagccacaagcaacattttctgcttgtttcggtgcagcattcataatgttacaccctac |
416 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13069112 |
ccatttttatgtaggtggctggtactgaggatggtataaaggagccacaagcaacattttctgcttgtttcggtgcagcattcataatgttacaccctac |
13069013 |
T |
|
| Q |
417 |
aaagtatgctgcaatgcttgctgaaaagatggagagtcatggtgcaacagggtggcttgttaacactggttggtccggtggcaggtatgcttttagtgct |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13069012 |
aaagtatgctgcaatgcttgctgaaaagatggagagtcatggtgcaacagggtggcttgttaacactggttggtccggtggcaggtatgcttttagtgct |
13068913 |
T |
|
| Q |
517 |
tctctttgcaatattgttgagtttctttgttttttcgcgctaaacatgatgt |
568 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13068912 |
tctctttgcaatattgttgagtttctttgttttttcgcgctaaacatgatgt |
13068861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 17 - 568
Target Start/End: Complemental strand, 12994756 - 12994212
Alignment:
| Q |
17 |
atatatctctgctgatagttacacgcggtaattttttattgcagaaaatactcgtgcagcctatcctatagagtacataccaaatgcaaagttaccatgt |
116 |
Q |
| |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12994756 |
atatatctctgctgatagttacatgcggtgattttttattgcagaaaatactcgtgcagcctatcctatagagtacataccaaatgcaaagttaccatgt |
12994657 |
T |
|
| Q |
117 |
gttggacctcatccaaagaatgttattcttttggcatgtgatgcatttggtgtgctaccacctgtgagtaagctaaccctggcgcagaccatgtaccatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12994656 |
gttggacctcatccaaagaatgttattcttttggcatgtgatgcatttggtgtgctaccacctgtgagtaagctaaccctggcgcagaccatgtaccatt |
12994557 |
T |
|
| Q |
217 |
tcatcagtggatatactgctctggtaataaatttcattctcagttctcactaatttttactatttgctaaaccaatgttgcttcagttatatgattctaa |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12994556 |
tcatcagtggatatactgctctggtaataaatttcattctca-------ctaatttttactatttgctaaaccaatgttgcttcagttatatgattctaa |
12994464 |
T |
|
| Q |
317 |
ccatttttatgtaggtggctggtactgaggatggtataaaggagccacaagcaacattttctgcttgtttcggtgcagcattcataatgttacaccctac |
416 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12994463 |
ccatttttatgtaggtggctggtactgaggatggtataaaggagccacaagcaacattttctgcttgtttcggtgcagcattcataatgttacaccctac |
12994364 |
T |
|
| Q |
417 |
aaagtatgctgcaatgcttgctgaaaagatggagagtcatggtgcaacagggtggcttgttaacactggttggtccggtggcaggtatgcttttagtgct |
516 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12994363 |
aaagtatgctgcaatgcttgctgaaaagatggagagtcatggtgcaacagggtggcttgttaacactggttggtccggtggcaggtatgcttttagtgct |
12994264 |
T |
|
| Q |
517 |
tctctttgcaatattgttgagtttctttgttttttcgcgctaaacatgatgt |
568 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12994263 |
tctctttgcaatattgttgagtttctttgttttttcgcgctaaacatgatgt |
12994212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 6e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 48 - 244
Target Start/End: Complemental strand, 28136832 - 28136636
Alignment:
| Q |
48 |
ttttttattgcagaaaatactcgtgcagcctatcctatagagtacataccaaatgcaaagttaccatgtgttggacctcatccaaagaatgttattcttt |
147 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||| || |||||||| || || |||||||||||||||||||| ||||| ||||||||||| || |||| |
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| T |
28136832 |
ttttgtattgcagaaaatactcgtgcagcttatccaattgagtacattcctaacgcaaagttaccatgtgttggtcctcacccaaagaatgtcatacttt |
28136733 |
T |
|
| Q |
148 |
tggcatgtgatgcatttggtgtgctaccacctgtgagtaagctaaccctggcgcagaccatgtaccatttcatcagtggatatactgctctggtaat |
244 |
Q |
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||||||||||||||||||||||||| |||||||| |||||||||| | || | ||||| ||||| |||||||||||||||||||| ||| ||||||| |
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| T |
28136732 |
tggcatgtgatgcatttggtgtgcttccacctgttagtaagctaagcttgtcacagacaatgtatcatttcatcagtggatatacagctttggtaat |
28136636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 329 - 506
Target Start/End: Complemental strand, 28136397 - 28136220
Alignment:
| Q |
329 |
aggtggctggtactgaggatggtataaaggagccacaagcaacattttctgcttgtttcggtgcagcattcataatgttacaccctacaaagtatgctgc |
428 |
Q |
| |
|
|||||||||| || || || ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |||| |||||||||||||| || |
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| T |
28136397 |
aggtggctggcacagaagagggtataaaggagccacaagcaacattttcggcttgttttggagcagcattcataatgctacatcctacaaagtatgcagc |
28136298 |
T |
|
| Q |
429 |
aatgcttgctgaaaagatggagagtcatggtgcaacagggtggcttgttaacactggttggtccggtggcaggtatgc |
506 |
Q |
| |
|
|||||||||||||| ||| | | ||||||||| || || ||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
28136297 |
catgcttgctgaaaaaatgcaaaatcatggtgctactggatggcttgttaacactggttggtctggtggaaggtatgc |
28136220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 328 - 491
Target Start/End: Complemental strand, 51934111 - 51933948
Alignment:
| Q |
328 |
taggtggctggtactgaggatggtataaaggagccacaagcaacattttctgcttgtttcggtgcagcattcataatgttacaccctacaaagtatgctg |
427 |
Q |
| |
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||||| ||||| || || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| | || ||||| || |||||| |
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| T |
51934111 |
taggttgctgggacagaagatggtataaaagagccacaagctacattttctgcttgtttcggtgcagcatttataatgatgcatcctaccaaatatgcta |
51934012 |
T |
|
| Q |
428 |
caatgcttgctgaaaagatggagagtcatggtgcaacagggtggcttgttaacactggttggtc |
491 |
Q |
| |
|
| ||||| ||||| |||||| ||| ||||| || || || |||||||| || ||||| ||||| |
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|
| T |
51934011 |
cgatgctggctgagaagatgcagaagcatggagctactggatggcttgtcaatactggctggtc |
51933948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 55 - 232
Target Start/End: Complemental strand, 51934422 - 51934245
Alignment:
| Q |
55 |
ttgcagaaaatactcgtgcagcctatcctatagagtacataccaaatgcaaagttaccatgtgttggacctcatccaaagaatgttattcttttggcatg |
154 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||| ||||| | | |||||||||||| || ||| |||||||||| || ||| | || || |
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| T |
51934422 |
ttgcagagaatactcgtgcagcgtatcctatagagtacatacctaatgctaggataccatgtgttgctccccatgcaaagaatgtcatccttctagcttg |
51934323 |
T |
|
| Q |
155 |
tgatgcatttggtgtgctaccacctgtgagtaagctaaccctggcgcagaccatgtaccatttcatcagtggatatac |
232 |
Q |
| |
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|||||||||||| || || || || || || ||||| | | |||| || || ||||||||||| |||||||| ||||| |
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| T |
51934322 |
tgatgcatttggggtactccccccagtaagcaagctgagcttggcccaaacaatgtaccattttatcagtggctatac |
51934245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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