View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8043_low_3 (Length: 563)

Name: NF8043_low_3
Description: NF8043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8043_low_3
NF8043_low_3
[»] chr5 (1 HSPs)
chr5 (10-556)||(8829990-8830533)
[»] chr1 (11 HSPs)
chr1 (10-170)||(43919005-43919163)
chr1 (16-106)||(43984624-43984714)
chr1 (16-106)||(44002632-44002722)
chr1 (19-108)||(43988882-43988970)
chr1 (19-102)||(43910375-43910458)
chr1 (221-298)||(43993014-43993088)
chr1 (221-313)||(43984429-43984518)
chr1 (137-177)||(44002555-44002595)
chr1 (132-177)||(43984554-43984599)
chr1 (232-310)||(43987865-43987945)
chr1 (221-310)||(43919178-43919265)


Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 10 - 556
Target Start/End: Complemental strand, 8830533 - 8829990
Alignment:
Q  10 gagatggacatcaagctacaacaccattcctgaaagatttaaaagcaagctacatgatgatagtccatagtcaccactatgtgccttgctaagtttattt 109  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8830533 gagaaggacatcaagctacaacaccattccagaaagatttaaaagcaagctacatgatgatagtccatagtcaccactatgtgccttgctaagtttattt 8830434  T
Q  110 ctaagcagctnnnnnnncttgatttatattctaagtgaagagattatgtttaagttgatttcacgtttcatggtcgatttcgtttgagttattatatata 209  Q
    ||||||||||       |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8830433 ctaagcagctaaaaaaacttgatttatattctaagtgaagagattatgtctaagttgatttcacgtttcatggtcgatttcgtttgagttattatatata 8830334  T
Q  210 tannnnnnnngtgtgtgattagtttggtttgtactttaagtcattatcaaagtgatagaggtagaggcagagagctgtgtttaataattgcaattttgtt 309  Q
    ||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8830333 tattttttt-gtgtgtgattagtttggtttgtactttaagtcattatcaaagtgatagaggtagaggcatagagctgtgtttaataattgcaattttgtt 8830235  T
Q  310 cagtttttattttgacaattttaagttgaaccgatcacctgaactaacccgtaattatcatcaagtttgtttgattcgggtcttcttaccaaatttatca 409  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  8830234 cagtttttattttaacaattttaagttgaaccgatcacctgaactaacccgtaattatcatcaagtttgtttgattcgggtcttctgacaaaatttatca 8830135  T
Q  410 agaacttaacaaaaccaaacacttttcattcgttgcgannnnnnnnctcgtnnnnnnnnnnncgcatactgaaccgatcgttacacctcaattggtagca 509  Q
    |||||| ||| |||||||||||||||||||||||||||        |||||           |||| |||||||||||||||||||||||||||||||||    
T  8830134 agaactaaaccaaaccaaacacttttcattcgttgcgattttttttctcgt--aaaaaaaaacgcaaactgaaccgatcgttacacctcaattggtagca 8830037  T
Q  510 ggctgcaaatttggtattgaaggaccaaacatataacaaggatgttg 556  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  8830036 ggctgcaaatttggtattgaagggccaaacatataacaaggatgttg 8829990  T

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Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 43919005 - 43919163
Alignment:
Q  10 gagatggacatcaagctacaacaccattcctgaaagatttaaaagcaagctacatgatgatagtccatagtcaccactatgtgccttgctaagtttattt 109  Q
    |||| ||||||||| ||||||||||| ||||||| |||| |||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||||||     
T  43919005 gagaaggacatcaaactacaacaccactcctgaaggattcaaaagcaagctacaggatgatagttcat-gccaccactatgtgccttgctaagtttattg 43919103  T
Q  110 ctaagcagctnnnnnnncttgatttatattctaagtgaagagattatgtttaagttgattt 170  Q
    |||||  |||        |||||||| |||||||||| ||||||||||||| |||||||||    
T  43919104 ctaagttgctaaaatat-ttgatttaaattctaagtgcagagattatgtttgagttgattt 43919163  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 43984714 - 43984624
Alignment:
Q  16 gacatcaagctacaacaccattcctgaaagatttaaaagcaagctacatgatgatagtccatagtcaccactatgtgccttgctaagttta 106  Q
    ||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  43984714 gacataaagctgcaacaccattcctgaaggatttaaaagcaagctacatgatgatagtccataaccaccactatgtaccttgctaagttta 43984624  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 44002722 - 44002632
Alignment:
Q  16 gacatcaagctacaacaccattcctgaaagatttaaaagcaagctacatgatgatagtccatagtcaccactatgtgccttgctaagttta 106  Q
    ||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  44002722 gacataaagctgcaacaccattcctgaaggatttaaaagcaagctacatgatgatagtccataaccaccactatgtaccttgctaagttta 44002632  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 43988970 - 43988882
Alignment:
Q  19 atcaagctacaacaccattcctgaaagatttaaaagcaagctacatgatgatagtccatagtcaccactatgtgccttgctaagtttatt 108  Q
    ||||||||||||||  |||||| ||||||||||| |||||||||||||| |||||||||||  |||||| | ||||||||||||||||||    
T  43988970 atcaagctacaacagtattcctaaaagatttaaaggcaagctacatgat-atagtccatagctaccactctttgccttgctaagtttatt 43988882  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 43910375 - 43910458
Alignment:
Q  19 atcaagctacaacaccattcctgaaagatttaaaagcaagctacatgatgatagtccatagtcaccactatgtgccttgctaag 102  Q
    ||||| ||||||||||| ||||||| ||||||||||||||| ||| || |||||| ||||| |||||||| || ||||||||||    
T  43910375 atcaaactacaacaccactcctgaaggatttaaaagcaagccacacgaggatagttcatagccaccactacgttccttgctaag 43910458  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 43993088 - 43993014
Alignment:
Q  221 tgtgtgattagtttggtttgtactttaagtcattatcaaagtgatagaggtagaggcagagagctgtgtttaataatt 298  Q
    |||||||||| ||||||||||||||||||| ||||||||||| ||||||| |   |||||||||||||||| ||||||    
T  43993088 tgtgtgattaatttggtttgtactttaagtgattatcaaagtaatagaggca---gcagagagctgtgtttgataatt 43993014  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 221 - 313
Target Start/End: Complemental strand, 43984518 - 43984429
Alignment:
Q  221 tgtgtgattagtttggtttgtactttaagtcattatcaaagtgatagaggtagaggcagagagctgtgtttaataattgcaattttgttcagt 313  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||||||||  |    |||||  |||| ||||| |||||||||||||||||||    
T  43984518 tgtgtgattaatttcgtttgtactttaagttattatcaaagtgatagagaca---tcagagctctgtctttaaaaattgcaattttgttcagt 43984429  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 44002595 - 44002555
Alignment:
Q  137 attctaagtgaagagattatgtttaagttgatttcacgttt 177  Q
    |||||| ||||||||||||||||||||||||||||| ||||    
T  44002595 attctaggtgaagagattatgtttaagttgatttcatgttt 44002555  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 43984599 - 43984554
Alignment:
Q  132 tttatattctaagtgaagagattatgtttaagttgatttcacgttt 177  Q
    |||| |||||| ||||||||||||||||||| ||||||||| ||||    
T  43984599 tttacattctaggtgaagagattatgtttaaattgatttcatgttt 43984554  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 43987945 - 43987865
Alignment:
Q  232 tttggtttgtacttt-aagtcattatcaaagtgatagaggtagaggcag---agagctgtgtttaataattgcaattttgttc 310  Q
    ||||||||||||||| ||||  |||||||| |||| ||| ||||||| |   |||||||||||||| ||||||||||||||||    
T  43987945 tttggtttgtacttttaagt--ttatcaaaatgattgagatagaggctgcaaagagctgtgtttaaaaattgcaattttgttc 43987865  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 310
Target Start/End: Original strand, 43919178 - 43919265
Alignment:
Q  221 tgtgtgattagtttggtttgtacttt-aagtcattatcaaagtgatagaggtagaggcagagagctgtgtttaataattgcaattttgttc 310  Q
    |||||||||| ||||||||||||||| |||| ||| | ||| ||||| ||| ||   ||||||||||||||||| || |||||||| ||||    
T  43919178 tgtgtgattaatttggtttgtacttttaagtgatttttaaaatgatataggcag---cagagagctgtgtttaaaaaatgcaatttagttc 43919265  T

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