View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8043_low_5 (Length: 507)
Name: NF8043_low_5
Description: NF8043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8043_low_5 |
 | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 24638726 - 24639225
Alignment:
| Q |
1 |
tccaccccaatcaccatcagtatagaagataagtttctcaataggggatggatagagatgcaaaccgtagtgtagggttccccgaacataacacatgatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24638726 |
tccaccccaatcaccatcagtatagaagataagtttctcaataggggatggatagagatgcaaaccgtagtgtagggttccctgaacataacacatgatg |
24638825 |
T |
|
| Q |
101 |
cgtttgagggcaagcatgtggttagtacaaggggcatgcatgcgaagacacacctgccggacagcataagagatgtcaggccgggtgaaagtaagatact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638826 |
cgtttgagggcaagcatgtggttagtacaaggggcatgcatgcgtagacacacctgccggacaacataagagatgtcaggccgggtgaaagtaagatact |
24638925 |
T |
|
| Q |
201 |
ggaagactcctgcaagactccgatatcaggtgggatcatcgtatgaagtggcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaagg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638926 |
ggaagactcctgcaagactccgatatcaggtgggatcatcgtatgaagtgtcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaagg |
24639025 |
T |
|
| Q |
301 |
tttgcatgaggccatgcctgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgcgagcatgtctggtcacaacaatgcccaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24639026 |
tttgcatgaggccatgcctgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgcgagcatgtctggtcacaacaatgcccaag |
24639125 |
T |
|
| Q |
401 |
aagtaactcagtggaccataatccttcatagctaactcagaacaaggagtgtcatgatggatttctgaagatcgtgagaggaggtgatgaggatgatgtc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24639126 |
aagtaactcagtggaccataatccttcatagctaactcagaacaaggagtttcatgatggatttctgaagatcgtgagaggaggtgatgaggatgatgtc |
24639225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 24647655 - 24647904
Alignment:
| Q |
1 |
tccaccccaatcaccatcagtatagaagataagtttctcaataggggatggatagagatgcaaaccgtagtgtagggttccccgaacataacacatgatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24647655 |
tccaccccaatcaccatcagtatagaagataagtttctcaataggggatggatagagatgcaaaccgtagtgtagggttccctgaacataacacatgatg |
24647754 |
T |
|
| Q |
101 |
cgtttgagggcaagcatgtggttagtacaaggggcatgcatgcgaagacacacctgccggacagcataagagatgtcaggccgggtgaaagtaagatact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24647755 |
cgtttgagggcaagcatgtggttagtacaaggggcatgcatgcgaagacacacctgccggacaacataagagatgtcaggccgggtgaaattaagatact |
24647854 |
T |
|
| Q |
201 |
ggaagactcctgcaagactccgatatcaggtgggatcatcgtatgaagtg |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24647855 |
ggaagactcctgcaagactccgatatcaggtgggatcatcgtatgaagtg |
24647904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 48099840 - 48100340
Alignment:
| Q |
1 |
tccaccccaatcaccatcagtatagaagataagtttctcaataggggatggatagagatgcaaaccgtagtgtagggttccccgaacataacacatgatg |
100 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||| ||| ||| | ||||||| | |||| |
|
|
| T |
48099840 |
tccaccccaatcagcatcagtataggagataagtttctcaatacgggatggataaagatgcaaaccatagtgtaaggtgccctgcacataacgtaggatg |
48099939 |
T |
|
| Q |
101 |
cgtttgagggcaagcatgtggttagtacaaggggcatgcatgcgaagacacacctgccggacagcataagagatgtcaggccgggtgaaagtaagatact |
200 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||| |||||||||||||| | ||| ||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
48099940 |
cgtttgagggcaagcatgtggtcggtgcaaggggcatgcatgtgaagacacacctgctgaacaacataagaaatgtcaggacgggtgaaagtaagatact |
48100039 |
T |
|
| Q |
201 |
ggaagactcctgcaagactccgatatcaggtgggatcatcgtatgaagtggcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaagg |
300 |
Q |
| |
|
| ||| |||||||||||||||||||| ||||||| |||||||||| |||| |||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48100040 |
gcaaggctcctgcaagactccgatataaggtggggtcatcgtatggagtgccagcggaggtactgagcttctgtttggtgtcaactggagtagcagaagg |
48100139 |
T |
|
| Q |
301 |
tttgcatgaggccatgcctgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgcgagcatgtctggtcacaacaatgcccaag |
400 |
Q |
| |
|
|||||| |||||||||||||| || ||||| || ||| | |||| ||||| ||||| || || | | | | ||||||| ||||| |||||||||| |
|
|
| T |
48100140 |
tttgcacgaggccatgcctgcgcgggcaatgatttcaccaacatagatactctgactaaggaaaatcccaccaacatgtctagtcacggcaatgcccaaa |
48100239 |
T |
|
| Q |
401 |
aagtaactcagtggaccataatccttcatagctaactcaga-acaaggagtgtcatgatggatttctgaagatcgtgagaggaggtgatgaggatgatgt |
499 |
Q |
| |
|
|| |||||||||||||| |||||||||||| |||||||| ||||||||| |||||||||||| |||| || || |||||||||||||||||||||| |
|
|
| T |
48100240 |
aaataactcagtggacccagatccttcatagcaaactcagaggcaaggagtgccatgatggattttcgaagctcatgggaggaggtgatgaggatgatgt |
48100339 |
T |
|
| Q |
500 |
c |
500 |
Q |
| |
|
| |
|
|
| T |
48100340 |
c |
48100340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 20620310 - 20619996
Alignment:
| Q |
1 |
tccaccccaatcaccatcagtatagaagataagtttctcaataggggatggatagagatgcaaaccgtagtgtagggttccccgaacataacacatgatg |
100 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| |
|
|
| T |
20620310 |
tccaccccaatcagcatcagtgtaggagataagtttctcaataggggatggatagagatgcaaaccatagtgtagggtgcccagaacataacacatgatg |
20620211 |
T |
|
| Q |
101 |
cgtttgagggcaagcatgtggttagtacaaggggcatgcatgcgaagacacacctgccggacagcataagagatgtcaggccgggtgaaagtaagatact |
200 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||| ||||||||| ||| || || |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20620210 |
cgtttgagggcaagcatgtggtcggtgcaaggggcatgcatgtgaagacacatctgttggccaacataagagatgtcaggtcgggtgaaagtaagatact |
20620111 |
T |
|
| Q |
201 |
ggaagactcctgcaagactccgatatcaggtgggatcatcgtatgaagtggcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaagg |
300 |
Q |
| |
|
||| |||||||||||| |||||| | |||||||| | ||||||||| ||||||||||||||||||| |||||||||||| ||||||| |||| |
|
|
| T |
20620110 |
tcaaggatcctgcaagacttcgatataaagtgggatcgttatatgaagtgttgacggtggtactgagcttctgtttggtgtcaactgtagtagcaaaagg |
20620011 |
T |
|
| Q |
301 |
tttgcatgaggccat |
315 |
Q |
| |
|
|| || |||||||| |
|
|
| T |
20620010 |
ttcacacgaggccat |
20619996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 9932558 - 9933058
Alignment:
| Q |
1 |
tccaccccaatcaccatcagtatagaagataagtttctcaataggggatggatagagatgcaaaccgtagtgtagggttccccgaacataacacatgatg |
100 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||| ||| ||| | ||||||| | |||| |
|
|
| T |
9932558 |
tccaccccaatcagcatcagtataggagataagtttctcaatacgggatggataaagatgcaaaccatagtgtaaggtgccctgcacataacgtaggatg |
9932657 |
T |
|
| Q |
101 |
cgtttgagggcaagcatgtggttagtacaaggggcatgcatgcgaagacacacctgccggacagcataagagatgtcaggccgggtgaaagtaagatact |
200 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||| ||| |||||||||| | ||||||||||| || ||||| ||||||||||||||||||| |
|
|
| T |
9932658 |
cgtttgagggcaagcatgtggtcggtgcaaggggcatgcatgtgaatacacacctgctgaacagcataagaaatatcaggacgggtgaaagtaagatact |
9932757 |
T |
|
| Q |
201 |
ggaagactcctgcaagactccgatatcaggtgggatcatcgtatgaagtggcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaagg |
300 |
Q |
| |
|
| ||| |||||||||||||||||||| ||||||| ||||| |||| |||| |||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9932758 |
gcaaggctcctgcaagactccgatataaggtggggtcatcatatggagtgtcagcggaggtactgagcttctgtttggtgtcaactggagtagcagaagg |
9932857 |
T |
|
| Q |
301 |
tttgcatgaggccatgcctgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgcgagcatgtctggtcacaacaatgcccaag |
400 |
Q |
| |
|
|||||| |||||||||||||| || ||||| || ||| |||||| ||||| ||||| || || | | | | ||||||| ||||| |||||||||| |
|
|
| T |
9932858 |
tttgcacgaggccatgcctgcgcgggcaatgatttcaccagcatagatactctgactaaggaaaatcccaccaacatgtctagtcacggcaatgcccaaa |
9932957 |
T |
|
| Q |
401 |
aagtaactcagtggaccataatccttcatagctaactcaga-acaaggagtgtcatgatggatttctgaagatcgtgagaggaggtgatgaggatgatgt |
499 |
Q |
| |
|
|| |||||||||||||| |||||||||||| |||||||| ||||||||| |||||||||||| |||| || || |||||||||||||||||||||| |
|
|
| T |
9932958 |
aaataactcagtggacccagatccttcatagcaaactcagaggcaaggagtgccatgatggattttcgaagctcatgggaggaggtgatgaggatgatgt |
9933057 |
T |
|
| Q |
500 |
c |
500 |
Q |
| |
|
| |
|
|
| T |
9933058 |
c |
9933058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 44387207 - 44386707
Alignment:
| Q |
1 |
tccaccccaatcaccatcagtatagaagataagtttctcaataggggatggatagagatgcaaaccgtagtgtagggttccccgaacataacacatgatg |
100 |
Q |
| |
|
||||||||||||| ||||||| ||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||| || ||||||||| || |||| |
|
|
| T |
44387207 |
tccaccccaatcagcatcagtgtaggagataagtttctcaataggagatagatagagatgcaaaccatagtgtagggtgccttgaacataacgcaggatg |
44387108 |
T |
|
| Q |
101 |
cgtttgagggcaagcatgtggttagtacaaggggcatgcatgcgaagacacacctgccggacagcataagagatgtcaggccgggtgaaagtaagatact |
200 |
Q |
| |
|
|||||||||||||||||||||| || ||| |||| |||||| ||||||||||||| ||||| ||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
44387107 |
cgtttgagggcaagcatgtggtcggtgcaaagggcgtgcatgtgaagacacacctgttggacaacataagatatgtcaggtcgggtgaaagtaagatact |
44387008 |
T |
|
| Q |
201 |
ggaagactcctgcaagactccgatatcaggtgggatcatcgtatgaagtggcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaagg |
300 |
Q |
| |
|
| ||| ||||||||||||| |||||| | |||||||| || ||||||||| | ||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
44387007 |
gcaaggctcctgcaagacttcgatataaagtgggatcgtcatatgaagtgccggcggtggtactgagcttttgtttggtgtcaactggagtagcagaagg |
44386908 |
T |
|
| Q |
301 |
tttgcatgaggccatgcctgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgcgagcatgtctggtcacaacaatgcccaag |
400 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||| |||| || ||||| |||| | | ||||| | ||||| ||||||||| |
|
|
| T |
44386907 |
tttgcacgaggccatgcctgctcgagcaataatatcactagcataggtactctggctgaggaagagtccaccatcatgtttagtcacggaaatgcccaaa |
44386808 |
T |
|
| Q |
401 |
aagtaactcagtggaccataatccttcatagctaactcaga-acaaggagtgtcatgatggatttctgaagatcgtgagaggaggtgatgaggatgatgt |
499 |
Q |
| |
|
|| |||||||||||||| ||||||| || || |||||||| ||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||| |
|
|
| T |
44386807 |
aaataactcagtggacccaaatccttaatggcaaactcagatgcaaggagtgtcatgatggatttccgaagatcatgggaggatgtgatgaggatgatgt |
44386708 |
T |
|
| Q |
500 |
c |
500 |
Q |
| |
|
| |
|
|
| T |
44386707 |
c |
44386707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 4e-73; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 147 - 497
Target Start/End: Original strand, 21877278 - 21877629
Alignment:
| Q |
147 |
gacacacctgccggacagcataagagatgtcaggccgggtgaaagtaagatactggaagactcctgcaagactccgatatcaggtgggatcatcgtatga |
246 |
Q |
| |
|
||||||||| |||||| |||||||||| ||||||||||||||||||||||| || |||| || |||| |||| ||||| |||||| |||||||||||| |
|
|
| T |
21877278 |
gacacacctaccggacgacataagagatatcaggccgggtgaaagtaagatattgcaagaatcttgcagaactctgatataaggtggtatcatcgtatga |
21877377 |
T |
|
| Q |
247 |
agtggcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataatgccactagcataa |
346 |
Q |
| |
|
|||| || | ||||||||||| || ||| |||| ||||||||||||||||||||||||| |||||||| || |||||||||||| | ||||||||||| |
|
|
| T |
21877378 |
agtgacatcagtggtactgagtttttgcttggttacaactggagtagcagaaggtttgcacaaggccatgtctactcgagcaataaagtcactagcataa |
21877477 |
T |
|
| Q |
347 |
atactttgactgagtaagaacttgcgagcatgtctggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagctaactcaga-acaa |
445 |
Q |
| |
|
||||| ||||| | || | | | | ||||||||||||||| | | |||||| ||||||||||| |||||| |||||||||||| |||||||| ||| |
|
|
| T |
21877478 |
atactctgactagggaaaatcctaccagcatgtctggtcacgaaagtgcccaggaagtaactcaatggacccaaatccttcatagtaaactcagaggcaa |
21877577 |
T |
|
| Q |
446 |
ggagtgtcatgatggatttctgaagatcgtgagaggaggtgatgaggatgat |
497 |
Q |
| |
|
| |||| |||||||||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
21877578 |
gtagtgccatgatggatttatgaagatcatgggaggaggtgatgaggatgat |
21877629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 56 - 225
Target Start/End: Original strand, 22207940 - 22208109
Alignment:
| Q |
56 |
agatgcaaaccgtagtgtagggttccccgaacataacacatgatgcgtttgagggcaagcatgtggttagtacaaggggcatgcatgcgaagacacacct |
155 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||| || |||| ||||||| | ||||| ||||| || ||||||| ||||||| ||||| |||||| |
|
|
| T |
22207940 |
agatgcaaaccatagtacagggttcccttaacataatgcaagatgtgtttgagagtaagcacgtggtcggtgcaaggggtatgcatgtgaagatacacct |
22208039 |
T |
|
| Q |
156 |
gccggacagcataagagatgtcaggccgggtgaaagtaagatactggaagactcctgcaagactccgata |
225 |
Q |
| |
|
| | ||| |||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
22208040 |
gttgaacaacataagagatgtcaggatgggtgaaagtaagatactgcaaggctcctgcaagactccgata |
22208109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 333
Target Start/End: Original strand, 22208132 - 22208206
Alignment:
| Q |
259 |
ggtactgagcttctgcgtggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataat |
333 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||| |||||||||||| ||||| ||||||| || |||||||| |
|
|
| T |
22208132 |
ggtactgagcttttgtttggtgtcaattggagtagtagaaggtttgcacgaggcgatgcctgtgcgggcaataat |
22208206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 291
Target Start/End: Complemental strand, 16594363 - 16594202
Alignment:
| Q |
130 |
aggggcatgcatgcgaagacacacctgccggacagcataagagatgtcaggccgggtgaaagtaagatactggaagactcctgcaagactccgatatcag |
229 |
Q |
| |
|
|||||||||||| ||||||| || ||| | |||||||| || | |||||| || ||||| || ||||||| || | | ||||||||||||||||| || |
|
|
| T |
16594363 |
aggggcatgcatatgaagacaaacttgctgaacagcatatgataagtcaggtcgagtgaaggtgagatactagagggcccctgcaagactccgatacaag |
16594264 |
T |
|
| Q |
230 |
gtgggatcatcgtatgaagtggcagcggtggtactgagcttctgcgtggtgtcaactggagt |
291 |
Q |
| |
|
| ||||| || || |||||| | | || ||| ||||| |||||| |||||||||| ||||| |
|
|
| T |
16594263 |
gaaggatcctcataagaagtgccggaggaggtgctgagtttctgcttggtgtcaacaggagt |
16594202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 138 - 333
Target Start/End: Complemental strand, 23583743 - 23583548
Alignment:
| Q |
138 |
gcatgcgaagacacacctgccggacagcataagagatgtcaggccgggtgaaagtaagatactggaagactcctgcaagactccgatatcaggtgggatc |
237 |
Q |
| |
|
||||| ||||||||||||| | ||| |||||||||||| ||| |||||||||||||||||||| ||| |||| ||||||| | ||| |||||||||| |
|
|
| T |
23583743 |
gcatgtgaagacacacctgttgaacaacataagagatgtgaggacgggtgaaagtaagatactgcaaggctcccacaagacttcaatacaaggtgggatc |
23583644 |
T |
|
| Q |
238 |
atcgtatgaagtggcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataat |
333 |
Q |
| |
|
||||||| |||| | | |||| ||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
23583643 |
gtcgtatggagtgccgatagaggtaacgagcttctgtttggtgtcaactggagtagtagaaggtttgcacgaggccatgcctgctcgggcaataat |
23583548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 23583856 - 23583737
Alignment:
| Q |
1 |
tccaccccaatcaccatcagtatagaagataagtttctcaataggggatggatagagatgcaaaccgtagtgtagggttccccgaacataacacatgatg |
100 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||| |||||||| || |||| |
|
|
| T |
23583856 |
tccacccgaatcagcatcagtataggagataagtttctcaatagggaatggatagagatgcaaaccatagtgtagggtgccctgaacataatgcaagatg |
23583757 |
T |
|
| Q |
101 |
cgtttgagggcaagcatgtg |
120 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
23583756 |
cgtttgagagcaagcatgtg |
23583737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 500
Target Start/End: Complemental strand, 23583500 - 23583380
Alignment:
| Q |
381 |
tggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagctaactcagaac-aaggagtgtcatgatggatttctgaagatcgtgaga |
479 |
Q |
| |
|
||||||| ||||||| || || |||| || |||||| ||||||||||||| |||||||| |||||||| |||||| ||||| |||||| || || |
|
|
| T |
23583500 |
tggtcacggcaatgccaaaaaaataacacaatggacccaaatccttcatagcaaactcagaggtaaggagtgccatgatagattttcgaagataatggga |
23583401 |
T |
|
| Q |
480 |
ggaggtgatgaggatgatgtc |
500 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
23583400 |
ggaggtgataaggatgatgtc |
23583380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 318
Target Start/End: Complemental strand, 31616 - 31408
Alignment:
| Q |
110 |
gcaagcatgtggttagtacaaggggcatgcatgcgaagacacacctgccggacagcataagagatgtcaggccgggtgaaagtaagatactggaagactc |
209 |
Q |
| |
|
||||||||||| | || | ||||||||||||| ||||||| || ||| | |||||||| || |||||||| | ||||| || |||||||| | | | | |
|
|
| T |
31616 |
gcaagcatgtgttccgtgcgaggggcatgcatgtgaagacaaacttgctgaacagcataggatatgtcaggttgagtgaaggtgagatactgtagggccc |
31517 |
T |
|
| Q |
210 |
ctgcaagactccgatatcaggtgggatcatcgtatgaagtggcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaaggtttgcatga |
309 |
Q |
| |
|
|||||||||||||||| ||| | ||| || || ||| || | | || ||| ||||| |||||| |||||||||| ||||| || |||||||| || || |
|
|
| T |
31516 |
ctgcaagactccgatacaaggaagtatcctcataagaaatgtcggaggaggtgctgagtttctgcttggtgtcaacaggagtggctgaaggtttacagga |
31417 |
T |
|
| Q |
310 |
ggccatgcc |
318 |
Q |
| |
|
|||||||| |
|
|
| T |
31416 |
cgccatgcc |
31408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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