View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8043_low_7 (Length: 448)
Name: NF8043_low_7
Description: NF8043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8043_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 8404852 - 8405157
Alignment:
| Q |
1 |
agatgaaggtaaacagttaagtggtgatgaagattgtgatgaatgcatgttgcaaatattttgtgtttagccttttgattgaagattttagtatatgtat |
100 |
Q |
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| T |
8404852 |
agatgaaggtaaacagttaagtggtgatgaaaattttaatgaatgcatgttgcaaatattttgtgtttagccttttgattgaagattttagtatatgtat |
8404951 |
T |
|
| Q |
101 |
atatttatacaaa----taactaactagaaaagaaggtgctggat-cggaaacattaacatgt-ggggtccagtttacccttgacatatttgcttatgtc |
194 |
Q |
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| T |
8404952 |
atatttatacaaataattaactaactagaaaagaaggtgctggatacggaaacattaacatgtgggggtccagtttacccttgacatatttgcttatgtc |
8405051 |
T |
|
| Q |
195 |
ataatcttgaccccattcctcttcaaaatattgaagccatgtaattaatgcaatcaccatcatgctaaataatatggttgagttaaataaaaatacagta |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
8405052 |
ataatcttgaccccattcctcttcaaaatattgaagccatg----taatggaatcaccatcatgctaaataata---ttgagttagataaaaatacagta |
8405144 |
T |
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| Q |
295 |
taatattcttttc |
307 |
Q |
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||||||||||||| |
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| T |
8405145 |
taatattcttttc |
8405157 |
T |
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