View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8044_high_1 (Length: 656)
Name: NF8044_high_1
Description: NF8044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8044_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 16 - 633
Target Start/End: Complemental strand, 34485016 - 34484405
Alignment:
| Q |
16 |
caaacacattcttcatcctgctatccaatgttgacatttccaccttcaatagttgaagttgaggtgtaataaccattgaccttcaaaatcaaatttagcg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34485016 |
caaacacattcttcatcctgctatccaatgttgacatttccactttcaatagttgaagttgaggtgtaataaccattgaccttcaaaatcaaatttggcg |
34484917 |
T |
|
| Q |
116 |
cacttgatagtttttaattgcttaaatagtaattctttattcannnnnnnnnnnnggaaaaataatacttttattgttaaccgagtttatttatgttagg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34484916 |
cacttgatagtttttaattgcttaaatagtaattctttattcatttttttttt--ggaaaaataatacttttattgttaaccgagtttatttatgttagg |
34484819 |
T |
|
| Q |
216 |
tagatgaaggatgattatactattgaattatggagcaaagcattttagcctgttcnnnnnnnnnnnttattgagcaaaggatcaatggaat-agttgaga |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
34484818 |
tagatgaaggatgattatactattgaattatggagcaaagcattttagcctgttcaaaaaaaaaaattattgagcaaaggatcaatggaatgagttgaga |
34484719 |
T |
|
| Q |
315 |
agttgaacaagaattaatataggaggtgaattatttgatatcagttgttaacaaatacctctctcttaactattattcactgacatttgtgaattaaaaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34484718 |
agttgaacaagaattaatataggaggtgaattatttgatatcagttgttaacaaatacctctctcttaactattattcactgacatttgtgaattaaaaa |
34484619 |
T |
|
| Q |
415 |
tggaataaaagtctaaccagttttgactatgagattcnnnnnnnaggagaatatgagattcttaaattttaaatgcaatattctttgtcccacatcacca |
514 |
Q |
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| T |
34484618 |
tggaataaaagtctaaccagttttgactatgagattctttttttaggagaatatgagattcttaaattttaaatgcaatattctttgtcccacat----- |
34484524 |
T |
|
| Q |
515 |
caccagtaggggtaaggcaacaaattaagataagatggtggtgtgcaagtaaacaaggctgtgtaatgcatgtccacaataaaactttaaagcaatatat |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34484523 |
caccagtaggggtaaggcaacaaattaagataagatggtggtgtgcaagtaaacaaggctgtgtaatgcatgtccacaataaaactttaaagcaatatat |
34484424 |
T |
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| Q |
615 |
cttaataatttgattacta |
633 |
Q |
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||||||||||||||||||| |
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| T |
34484423 |
cttaataatttgattacta |
34484405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 307 - 402
Target Start/End: Complemental strand, 34490126 - 34490030
Alignment:
| Q |
307 |
agttgagaagttgaacaagaattaatataggaggtgaattatttgatatcagttgttaacaa-atacctctctcttaactattattcactgacattt |
402 |
Q |
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| T |
34490126 |
agttgagacgtttaacaagaattaatataggaggtgaattatttgatatcagttgttaacaacatacatctctcttaacaattaattacggacattt |
34490030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 557 - 620
Target Start/End: Complemental strand, 34489877 - 34489814
Alignment:
| Q |
557 |
gtgcaagtaaacaaggctgtgtaatgcatgtccacaataaaactttaaagcaatatatcttaat |
620 |
Q |
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| T |
34489877 |
gtgcaagtacacacggctgtgtaatgcatgtccacaacaaaactttaaagcaatatatcttaat |
34489814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 421 - 511
Target Start/End: Complemental strand, 34489973 - 34489885
Alignment:
| Q |
421 |
aaaagtctaaccagttttgactatgagattcnnnnnnnaggagaatatgagattcttaaattttaaatgc-aatattctttgtcccacatca |
511 |
Q |
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| T |
34489973 |
aaaagtctaaccagttttgactacgagatt---tttttaggagaatatgagattcttaaattttaaatgcaaatattccttgtcccacatca |
34489885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 34480418 - 34480357
Alignment:
| Q |
16 |
caaacacattcttcatcctgctatccaatgttgacatttccaccttcaatagttgaagttga |
77 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| |
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| T |
34480418 |
caaacatattcttcatcctgctttccaatgttgacatttctgccttcactagttgaagttga |
34480357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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