View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8044_high_18 (Length: 247)
Name: NF8044_high_18
Description: NF8044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8044_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 8040466 - 8040694
Alignment:
| Q |
1 |
catgtaaaataaactcatacgaaaatgttacaaacctgaataacataatttccatattgatcatgtgctaaagtgcagacagattgcatgatttcttcta |
100 |
Q |
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| T |
8040466 |
catgtaaaataaactcatacgaaaatgttacaaacctgaataacataatttccatattgatcatgtgctaaagtgcagacagattgcatgatttcttcta |
8040565 |
T |
|
| Q |
101 |
tgacaatttcttgagtttttagatcatcgaagtgttctagaaccctatgttaggatccatgtaaagtgttaattgtcaaataaaactctaaaagaaataa |
200 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8040566 |
tgataatttcttaagtttttagatcatcgaagtgttctagaaccctatgttaggatccatgtaaagtgttaattgtcaaataaaactctaaaagaaataa |
8040665 |
T |
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| Q |
201 |
atctcatactgtgtcaatagaaggtgaat |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
8040666 |
atctcatactgtgtcaatagaaggtgaat |
8040694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 42528880 - 42528652
Alignment:
| Q |
1 |
catgtaaaataaactcatacgaaaatgttacaaacctgaataacataatttccatattgatcatgtgctaaagtgcagacagattgcatgatttcttcta |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
42528880 |
catgtaaaataaactcatacgaaaatgttacaaacctgaataacataatttccatattgatcctgtgctaaagtgcagacagattgcatgatttcttcca |
42528781 |
T |
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| Q |
101 |
tgacaatttcttgagtttttagatcatcgaagtgttctagaaccctatgttaggatccatgtaaagtgttaattgtcaaataaaactctaaaagaaataa |
200 |
Q |
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||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| ||||||||| |
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| T |
42528780 |
tgataatttcttgagtttttagatcatcgcagtgttctagaaccctctgttaggatccatgtaaactgttaattgtcaaataaaatactacaagaaataa |
42528681 |
T |
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| Q |
201 |
atctcatactgtgtcaatagaaggtgaat |
229 |
Q |
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| T |
42528680 |
agctcatactgtgtcaataaaaggtgaat |
42528652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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