View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8044_high_9 (Length: 331)
Name: NF8044_high_9
Description: NF8044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8044_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 32 - 314
Target Start/End: Original strand, 44791675 - 44791957
Alignment:
| Q |
32 |
tcttacataggtaatcaatcaagtccctctaatgagaaaaatgatgaacttgagtcggttgacaataatattggtaatcttcgagagaacaccaccttac |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44791675 |
tcttacataggtaatcaatcaagtccctctggtgagaaaaatgatgaacttgagtcggttgacaataatattggtaatcttcaagagaacaccaccttac |
44791774 |
T |
|
| Q |
132 |
acgtctttgtcactaaaaaatcccttagaattaattaggagtttccaaaatcatttaaaaatgaaggttttcaaggnnnnnnnttgagaggaggaccaaa |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44791775 |
acgtctttgtcactaaaaaatcccttagaattaattaggagtttccaaaatcatttaaaaatgaaggttttcaaggaaaaaaattgagaggaggaccaaa |
44791874 |
T |
|
| Q |
232 |
gaagcacaagcatgaagataagtacatgtaaaatgaaaaggcgagaaattcattggtgtatgcataaaatatagttatatggt |
314 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44791875 |
gaagcacaagcatgaagataagtacgtgtaaaatgaaaaagcgagaaattcattggtgtatgcataaaatatagttatatggt |
44791957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 32 - 314
Target Start/End: Complemental strand, 35165935 - 35165660
Alignment:
| Q |
32 |
tcttacataggtaatcaatcaagtccctctaatgagaaaaatgatgaacttgagtcggttgacaataatattggtaatcttcgagagaacaccaccttac |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35165935 |
tcttacataggtaatcaatcaagtccctctagtgagaaaaatgatgaacttgagtcggttgacaataatattggtaatcttcaagagaacaccaccttac |
35165836 |
T |
|
| Q |
132 |
acgtctttgtcactaaaaaatcccttagaattaattaggagtttccaaaatcatttaaaaatgaaggttttcaaggnnnnnnnttgagaggaggaccaaa |
231 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
35165835 |
acgtctctgtcactaaaaaatcccttagaattaattaggagtttccaaaatcatttaaaaatgaa-------aaggaaaaaaattgagaggaggaccaaa |
35165743 |
T |
|
| Q |
232 |
gaagcacaagcatgaagataagtacatgtaaaatgaaaaggcgagaaattcattggtgtatgcataaaatatagttatatggt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35165742 |
gaagcacaagcatgaagataagtacatgtaaaatgaaaaagcgagaaattcattggtgtatgcataaaatatagttatatggt |
35165660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University