View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8044_low_10 (Length: 342)
Name: NF8044_low_10
Description: NF8044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8044_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 70 - 327
Target Start/End: Original strand, 40718630 - 40718884
Alignment:
| Q |
70 |
taataacaaagttaattcacattaggttttgttcattactagtataatgatctgtgtcaagcacgacatgcattaagtgaatcacgtgactgctgtttgc |
169 |
Q |
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| T |
40718630 |
taataacaaagttaattcacattaggttttgttcattactagtataatgatccgtgtcaagcacgacatgcattaagtgaatcacgtgactgctgtttgc |
40718729 |
T |
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| Q |
170 |
caaaatcagatgttgttccaccttctttgtctttcaactatcttcccctcctcttaattttgcagaaaagttatgactacgcttctttgtctttcactat |
269 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
40718730 |
caaaatcagatgttgtttcaccttctttgtctttcaactatcttcccctcctcttaatttcgcagaaaaattatgactacgcttctttgtctttcactat |
40718829 |
T |
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| Q |
270 |
gatctcaatccagagtttttggccctaattaatatcgtattttatcagagctatatat |
327 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40718830 |
gatctcaatccagagtttttggcccta---aatatcgtattttatcagagctatatat |
40718884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 199
Target Start/End: Original strand, 17625943 - 17625972
Alignment:
| Q |
170 |
caaaatcagatgttgttccaccttctttgt |
199 |
Q |
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| T |
17625943 |
caaaatcagatgttgttccaccttctttgt |
17625972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 199
Target Start/End: Complemental strand, 53320475 - 53320446
Alignment:
| Q |
170 |
caaaatcagatgttgttccaccttctttgt |
199 |
Q |
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| T |
53320475 |
caaaatcagatgttgttccaccttctttgt |
53320446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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