View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8044_low_12 (Length: 326)
Name: NF8044_low_12
Description: NF8044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8044_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 38883601 - 38883911
Alignment:
| Q |
1 |
ttaacctcttcatacttccaggggatacaatgatatgtctattggttgatttcattagttaacatcctcaatttgttccgtgacgataaaattcgcgata |
100 |
Q |
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| T |
38883601 |
ttaacctcttcatacttccaggggatacaatgatatgtctattggttgatttcattagttaacatcctcaatttgttctgtgacgattaaattcgcgata |
38883700 |
T |
|
| Q |
101 |
attctaaataaaatattccatattttgtcaaatctgactcttggtttcacttatgcaggaatttggttcttttggcttgaatagtcatggctaaggatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38883701 |
attctaaataaaatattccatattttgtcaaatctgactcttggtttcacttatgcaggaatttggttcttttggcttgaatagtcatggctaaggatca |
38883800 |
T |
|
| Q |
201 |
aattcaggtgctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgat |
300 |
Q |
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| T |
38883801 |
aattcaggtgctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgat |
38883900 |
T |
|
| Q |
301 |
ctgttctgtgt |
311 |
Q |
| |
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||||||||||| |
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| T |
38883901 |
ctgttctgtgt |
38883911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 38892969 - 38893100
Alignment:
| Q |
177 |
ttgaatagtcatggctaaggatcaaattcaggtgctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatg |
276 |
Q |
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||||| ||| ||||| ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| || ||||| ||||||||||| ||||| ||| |
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| T |
38892969 |
ttgaaaagtaatggcaaaggagcaaattcaggtgctaaatgcacttgatgtggcgaaaacgcaatggtatcacttcacagcaatcatcattgctggaatg |
38893068 |
T |
|
| Q |
277 |
ggattctttacagatgcctatgatctgttctg |
308 |
Q |
| |
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||||||||||| |||||||||||||||||||| |
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| T |
38893069 |
ggattctttactgatgcctatgatctgttctg |
38893100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 308
Target Start/End: Complemental strand, 30621081 - 30620978
Alignment:
| Q |
205 |
caggtgctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgt |
304 |
Q |
| |
|
|||||||||||||| || ||||| || ||||||||||||||||||||||| ||||| |||||||||| ||||| ||||| || ||||| || ||||| | |
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| T |
30621081 |
caggtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctat |
30620982 |
T |
|
| Q |
305 |
tctg |
308 |
Q |
| |
|
|||| |
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|
| T |
30620981 |
tctg |
30620978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 16175559 - 16175462
Alignment:
| Q |
211 |
ctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgttctg |
308 |
Q |
| |
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|||||||| || |||||||| || ||||||| ||||||||||||| |||| | |||||||| ||||| ||||| || ||||| |||||||| ||||| |
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| T |
16175559 |
ctaaatgcactagatgtggcaaagacacaattgtaccatttcactacaattgtgatagctggaatgggtttcttcactgatgcttatgatcttttctg |
16175462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 16223190 - 16223290
Alignment:
| Q |
208 |
gtgctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgttct |
307 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||| ||| || |||||| |||| | || ||||| ||||||||||| || ||||| |||||||| |||| |
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| T |
16223190 |
gtgctaaatgcacttgatgtggccaagacacaattgtatcacttcactacaattgtgattgctggaatgggattcttcactgatgcatatgatcttttct |
16223289 |
T |
|
| Q |
308 |
g |
308 |
Q |
| |
|
| |
|
|
| T |
16223290 |
g |
16223290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 16183800 - 16183900
Alignment:
| Q |
208 |
gtgctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgttct |
307 |
Q |
| |
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||||| ||||| || ||||| || || || |||| ||||||||||||| |||| | |||||||| ||||||||||| || ||||| |||||||| |||| |
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| T |
16183800 |
gtgcttaatgcactcgatgtcgcaaagacgcaattgtaccatttcactacaattgtgatagctggaatgggattcttcactgatgcatatgatcttttct |
16183899 |
T |
|
| Q |
308 |
g |
308 |
Q |
| |
|
| |
|
|
| T |
16183900 |
g |
16183900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 9700111 - 9700038
Alignment:
| Q |
235 |
acacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgttctg |
308 |
Q |
| |
|
||||||||||||||| | || || || | || ||||| ||||||||||| || |||||||||||||||||||| |
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|
| T |
9700111 |
acacaatggtaccatgtaacagctatagtaattgctggcatgggattcttcactgatgcctatgatctgttctg |
9700038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 37316274 - 37316177
Alignment:
| Q |
211 |
ctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgttctg |
308 |
Q |
| |
|
|||| ||| ||||||| || ||||||||||||||||||||||| || ||||| || ||||||||||||||||| |||||||| ||||| || ||||| |
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| T |
37316274 |
ctaactgcccttgatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctg |
37316177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 308
Target Start/End: Original strand, 19207037 - 19207113
Alignment:
| Q |
232 |
aaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgttctg |
308 |
Q |
| |
|
|||||||||||||||| |||||| || ||||| || |||||||||||||||| |||||||| ||||| || ||||| |
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| T |
19207037 |
aaaacacaatggtaccttttcacagccatcataattgctggtatgggattctgcacagatgcatatgaccttttctg |
19207113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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