View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8044_low_13 (Length: 314)
Name: NF8044_low_13
Description: NF8044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8044_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 26424544 - 26424253
Alignment:
| Q |
19 |
aggtggattggcagttatttattgataagtcacaaaagaagcttgtatagctatttttaattaacttcttgnnnnnnnnn-ctatttttaactaaatatg |
117 |
Q |
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| T |
26424544 |
aggtggattggcagttatttattgataagtcacaaaagaagcttgtatagctatttttaattaacttcttgaaaaaaaaaactatttttaactaaatatg |
26424445 |
T |
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| Q |
118 |
ttatattattttgaagaagnnnnnnnnccgttgcattttcaacaaatatttatattgtctccctnnnnnnnnnn---tattgtgagagaattatgctcta |
214 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
26424444 |
ttatattattttgaagaagaaaaaaaaccgttgcattttcaacaaatatttatattgtctccctcaaaaaaaaaatatattgtgagagaattaggctcta |
26424345 |
T |
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| Q |
215 |
aaatgagttggagcacccaaaatttgctactgtaatgtagtagcagttagaatagaaaagggtgctgagtagtataaagtagggagtataat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26424344 |
aaatgagttggagcacccaaaatttgctactgtaatgtagtagcagttagaatagaaaagggtgctgagtagtataaagtagggagtataat |
26424253 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 295
Target Start/End: Original strand, 28038506 - 28038605
Alignment:
| Q |
192 |
tattgtgagagaattatgctctaaaatgagttggagcacccaaaatttgctactgtaatgtagtagcagttagaat-agaaaagggtgctgagta-gtat |
289 |
Q |
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|||||||||||| || |||||| |||||||||| ||||||||||||||||| ||| |||||||||||||| | |||||||||||||||| |||| |
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| T |
28038506 |
tattgtgagagatgtaggctctataatgagttggcgcacccaaaatttgctagtgt------gtagcagttagaataaaaaaagggtgctgagtatgtat |
28038599 |
T |
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