View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8044_low_15 (Length: 288)
Name: NF8044_low_15
Description: NF8044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8044_low_15 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 3948926 - 3948646
Alignment:
| Q |
10 |
gaagaatatagatccatgactacaaaatccgttgttgtcttatactcgaaccactttggaacactgctccctggatacacataaatagcttgataagatt |
109 |
Q |
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| T |
3948926 |
gaagaagatagatccatgactacaaaatccgttgttgtcttatacacgaaccactttggaacactgctccctggatacacataaatagcttgataagatt |
3948827 |
T |
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| Q |
110 |
caatgtgaacgttataatcattgaacttattatgaaaatcctgttctgaagctgatacatgttggtatgcaaatttcagaatgtttatttgcaaattaaa |
209 |
Q |
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| T |
3948826 |
caatgtgaacgttataatcattgaacttattatgaaaatcctgttctgaagctgataaatgttggtatgcaaatttcagaatgtttatttgcaaattaaa |
3948727 |
T |
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| Q |
210 |
cac--tattcacgagagaatgttcatccaatttcaagcaattcgcaaacacaacccttttcatgttctccttgcattgttc |
288 |
Q |
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| T |
3948726 |
cacaatattcgcgagagaatgttcatccaatttcaagcaattcgcaaacacaacccttttcatgttctccttgcattgttc |
3948646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 288
Target Start/End: Complemental strand, 3965947 - 3965661
Alignment:
| Q |
4 |
gatgtcgaagaatatagatccatgactacaaaatccgttgttgtcttatactcgaaccactttggaacactgctccctggatacacataaatagcttgat |
103 |
Q |
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| T |
3965947 |
gatgtagaagaagatagatcaatgactacataatccgttgttgtcatatactcaaaccactctggaacgctgtttcctggatacacgtaaattgcttgat |
3965848 |
T |
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| Q |
104 |
aagattcaatgtgaacgttataatcattgaacttattatgaaaatcctgttctgaagctgatacatgttggtatgcaaatttcagaatgtttatttgcaa |
203 |
Q |
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| T |
3965847 |
aagaatcattgtgatccttataatcattgaacttattatgaaaatcatgttccaaagctgatacatgttggcatgcaaatttcatattgtttatttgcgc |
3965748 |
T |
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| Q |
204 |
attaaa--cactattcacgagagaatgttcatccaatttcaagcaattcgcaaacacaacccttttcatgttctccttgcattgttc |
288 |
Q |
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| T |
3965747 |
attaaacgcaatatttgcaagagaatgttcatccaatttcaagcaattcgcgaatacaaccctatacctgttctccttgaattgttc |
3965661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 288
Target Start/End: Original strand, 4016369 - 4016652
Alignment:
| Q |
4 |
gatgtcgaagaatatagatccatgactacaaaatccgttgttgtcttatactcgaaccactttggaacactgctccctggatacacataaatagcttgat |
103 |
Q |
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| T |
4016369 |
gatgtagaagaaggtagatcaatggctacataatccgttgttgtcttatattcaaaccaatctggaacacagctccctggatacacataaagtgcttgat |
4016468 |
T |
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| Q |
104 |
aagattcaatgtgaacgttataatcattgaacttattatgaaaatcctgttctgaagctgatacatgttggtatgcaaatttcagaatgtttatttgcaa |
203 |
Q |
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| T |
4016469 |
gagaatcatctt---cgttataattgttgaacttattgtgaaattcatctctagaagctgatacatgttggtatgcaaatttggtaatgtttatttgagc |
4016565 |
T |
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| Q |
204 |
attaaacac--tattcacgagagaatgttcatccaatttcaagcaattcgcaaacacaacccttttcatgttctccttgcattgttc |
288 |
Q |
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| T |
4016566 |
attaaacacaatatttgcgagtgaatgctcgtccaatttcaagcaattcgcaaacacaacccttttcctgttctccttgaattgttc |
4016652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 162 - 288
Target Start/End: Original strand, 3804171 - 3804299
Alignment:
| Q |
162 |
tgatacatgttggtatgcaaatttcagaatgtttatttgcaaattaaacac--tattcacgagagaatgttcatccaatttcaagcaattcgcaaacaca |
259 |
Q |
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| T |
3804171 |
tgatacatgttggtatgcaaatttcagaatgtttctttgcgcattaaatacagtattcgagggagattattcatccaattttaagcaattcgcaaacaca |
3804270 |
T |
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| Q |
260 |
acccttttcatgttctccttgcattgttc |
288 |
Q |
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| T |
3804271 |
acccttttcatgttctccttgcattgttc |
3804299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 3804113 - 3804173
Alignment:
| Q |
58 |
aaccactttggaacactgctccct-ggatacacataaatagcttgataagattcaatgtga |
117 |
Q |
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| T |
3804113 |
aaccactttggaacactgctccgttggatacacataaagagcttgataagagtcaatgtga |
3804173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 3922116 - 3922040
Alignment:
| Q |
36 |
atccgttgttgtcttatactcgaaccactttggaacactgctccctggatacacataaatagcttgataagattcaa |
112 |
Q |
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| T |
3922116 |
atccattgttgtcttgtactccaaccactttggaacactacttccaggatacacatacactgcttgataagaatcaa |
3922040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 4000384 - 4000459
Alignment:
| Q |
213 |
tattcacgagagaatgttcatccaatttcaagcaattcgcaaacacaacccttttcatgttctccttgcattgttc |
288 |
Q |
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| T |
4000384 |
tatttacgagagaatgttcatccaagttgaagcaattccagaactcaatccttttcttgttttccttgaattgttc |
4000459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 4023307 - 4023375
Alignment:
| Q |
220 |
gagagaatgttcatccaatttcaagcaattcgcaaacacaacccttttcatgttctccttgcattgttc |
288 |
Q |
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| T |
4023307 |
gagagaatgttcatccaagttccagcaattccagaactcaatccttttcttgttttccttgaattgttc |
4023375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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