View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8044_low_16 (Length: 280)
Name: NF8044_low_16
Description: NF8044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8044_low_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 8040106 - 8040357
Alignment:
| Q |
13 |
aatataagtgaagctttagaccgctttattaacgactacttgcagagtggaatgaactcttaaaagaagtgcttttgaatcaagttaatcttgcaaggaa |
112 |
Q |
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| T |
8040106 |
aatataagtgaagctttagaccactttattactgactacttggagagtggaatgaacacttaaaagaatgacttttgaatcaagttaatcttgcaaggaa |
8040205 |
T |
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| Q |
113 |
aaatactttagttatatgacacaagttagtttatatgagtaccattttggtattgtgagtgattcaaaaggagtggtttgtacctaaaatggataagagc |
212 |
Q |
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| T |
8040206 |
aaatactatagttatatgacacaagttagtttatatgagtaccattttggtattgtgagtgattcaaaaggag----------------tggataagagc |
8040289 |
T |
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| Q |
213 |
ctaagacataagacataatgaacatgatttcttctaaaatggttcaagagtcaagagataaccaaatt |
280 |
Q |
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| T |
8040290 |
ctaagacctaagacataatgaacatgatttcttctaaaatggttcaagagtcaagagataaccaaatt |
8040357 |
T |
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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 42529077 - 42528991
Alignment:
| Q |
195 |
cctaaaatggataagagcctaagacataagacataatgaacat---gatttcttctaaaatggttcaagagtcaagagataaccaaa |
278 |
Q |
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| T |
42529077 |
cctaaaatggataagagcccaagacctaagacagaatgaacagcaagatttcttctaaaatgattcaagattcaagagataaccaaa |
42528991 |
T |
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