View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8044_low_17 (Length: 269)
Name: NF8044_low_17
Description: NF8044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8044_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 13663358 - 13663118
Alignment:
| Q |
16 |
gttaaaatctaataataaagcagttggataatatgatacaaagcaattgaaagtttgtctacgattattaagaatcatgagaaatatcatgtattcatat |
115 |
Q |
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| T |
13663358 |
gttaagatctaataataaagcagttggataatatgatataaagcaattgaaagtttgtctactgttattaggaatcatgagaaatatcatttattcatat |
13663259 |
T |
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| Q |
116 |
ataaactacattagtgtaaatttacatttcttgttggaatgannnnnnnnnnnnnnnnnnactctagaattgatgttcatgtttactgttttattcttct |
215 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
13663258 |
ataaactacattagtgtaaatttacattttttgttagaatga--tttttttattttttttactctaggattgatgttcatgtttactgttttattcttct |
13663161 |
T |
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| Q |
216 |
gttgaatttctcatttacaggttagaattctagcaatagtata |
258 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
13663160 |
gttgaatttctcatttaaaggttagaattcttgcaatagtata |
13663118 |
T |
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