View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8044_low_2 (Length: 572)
Name: NF8044_low_2
Description: NF8044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8044_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 178212 - 177868
Alignment:
| Q |
19 |
taatcaccatgtatttgagaattttggataatagtaaagtttccatgtgagtatagtattgtagtagtattatgagaatatgcctccgtcctttcctccc |
118 |
Q |
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| T |
178212 |
taatcaccatgtatttgagaattttggataatagtaaagtttccatgtgactatagtattgtagtagtattatgagaatacgcctccgtcctttcctccc |
178113 |
T |
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| Q |
119 |
aatagtatttgcaatagtgcagcagcgaactatatcacaaagaacaccgatgacgaaaatataaaaatggagagaactttgtacaactatgctaatatgg |
218 |
Q |
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| T |
178112 |
aatagtatttgcaatagtgcagcagcgaactatatcacaaagaacaccgatgacgaaaatataaaaatggagagaactttgtacaagtatgctaatatgg |
178013 |
T |
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| Q |
219 |
cctcattaatttcatttacaactatgttaatcatatagttcttaaatactccaaacaatgtaaaagaactttaattttcccttcttttgaccaactttca |
318 |
Q |
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| T |
178012 |
cctcattaatttcatttacaactatgttaatcatatagttcttaaatactccaaacaatgtaaaagaactttaattttcccttcttttgaccaactttca |
177913 |
T |
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| Q |
319 |
gatctctataacttgttatgcaaacaaattgttaccgcagataaa |
363 |
Q |
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| T |
177912 |
gatctctataacttgttatgcaaacaaattgttaccgcagataaa |
177868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 362 - 564
Target Start/End: Complemental strand, 177800 - 177591
Alignment:
| Q |
362 |
aacacttcgaattaaggattaagtctgaccaagaattaaa----atgtttcaattctattgatcacaaagttttnnnnnnn---tgtaacaaatctaatt |
454 |
Q |
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| T |
177800 |
aacacttcgaattaaggattaagtctgaccaagaattaaataaaatgtttcaattctattgatcacaaagtttaaaaaaaaaaatgtaacaaatctaatt |
177701 |
T |
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| Q |
455 |
agttataaaagagtttaacatctttatcctctaatagtagaagaccatgtcaaagtgagtgcatagtttgaatttgaatacaaagcagaataactatcca |
554 |
Q |
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| T |
177700 |
agttataaaagagtttaacatctttatcctctaatagtagaagaccatgtcaaagtgagtgcatagtttgaatttgaatacaaagcagaataactatcca |
177601 |
T |
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| Q |
555 |
tcctctatga |
564 |
Q |
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| T |
177600 |
tcctctatga |
177591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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