View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8044_low_20 (Length: 250)
Name: NF8044_low_20
Description: NF8044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8044_low_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 54032373 - 54032610
Alignment:
| Q |
13 |
aatatgttgtgtcagtggagccttaaccatggcatttctcaaaggaaataagctgttacatatggagtactttcttcctgattccaaacatctcactgca |
112 |
Q |
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| T |
54032373 |
aatatgttgtgtcagtggagccttaaccatggcatttctcaaaggaaataagctgttacatatggagttctttcttcctgattccaaacatctcactgca |
54032472 |
T |
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| Q |
113 |
agtggagatgatacttggattctgggttgtctattgctcttagcaagtagtgttttttggtcatgttggatgatcatgcaggtaaaaaattaataaaacc |
212 |
Q |
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| T |
54032473 |
agtggagatgatacttggattctgggttgtctattgctcttagcaagtagtgttttttggtcatgttggatgatcatgcaggtaaaaaattaataaaacc |
54032572 |
T |
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| Q |
213 |
agaattaataatcttttaggtgacaagattattattca |
250 |
Q |
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| T |
54032573 |
agaattaataatcttttaggtgacaagattattattca |
54032610 |
T |
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