View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8044_low_23 (Length: 241)
Name: NF8044_low_23
Description: NF8044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8044_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3948657 - 3948433
Alignment:
| Q |
1 |
cttgcattgttcagaaattgaagggaacaacccttttcttgttcacaagtataatttcaagagattgaggtaggtctggcagactttgtagtttatggca |
100 |
Q |
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| T |
3948657 |
cttgcattgttcagaaattgaagggaacaacccttttcttgttcacaagtagaatttcaagagattgaggtaggtctggcagactttgcagtttatggca |
3948558 |
T |
|
| Q |
101 |
acatcttatggctagatattgtagccttatatcatattcttaaaacatgaaggaaaattttcaagaaacagtatcctaaatgtagggtttcaagctttct |
200 |
Q |
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| T |
3948557 |
acatcttatggctagatattgtagccttatatcatattcttaaaacataaaggaaaattttcatgaaacagtatcctaaatgtagggtttcaagctttct |
3948458 |
T |
|
| Q |
201 |
ttgacatccaaataatgcaggcatt |
225 |
Q |
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|||||||||||| |||||||||||| |
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| T |
3948457 |
ttgacatccaaacaatgcaggcatt |
3948433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 47 - 223
Target Start/End: Original strand, 3804352 - 3804525
Alignment:
| Q |
47 |
aagtataatttcaagagattgaggtaggtctggcagactttgtagtttatggcaacatcttatggctagatattgtagccttatatcatattcttaaaac |
146 |
Q |
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| T |
3804352 |
aagtataatttcaagagattgaggaagctctgacagagttttcagtttatggcaacatcaaatgtctagatactgtagtcttat--cagattcttaaa-c |
3804448 |
T |
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| Q |
147 |
atgaaggaaaattttcaagaaacagtatcctaaatgtagggtttcaagctttctttgacatccaaataatgcaggca |
223 |
Q |
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| T |
3804449 |
atgaaggaaaattttcatgaaacattatcctaaatgtaggattttaagttttctttgacatccaaacaatgcaggca |
3804525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 3965603 - 3965437
Alignment:
| Q |
56 |
ttcaagagattgaggtaggtctggcagactttgtagtttatggcaacatcttatggctagatattgtagccttatatcatattcttaaaacatgaaggaa |
155 |
Q |
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||||||||||||||| || ||||| ||| |||| || ||| ||||| |||||||| |||||||||| || ||||| || |||||||||||||||||||| |
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| T |
3965603 |
ttcaagagattgaggaagctctggtagagtttgcagcttaaggcaatatcttatgtctagatattgcagtcttat--caaattcttaaaacatgaaggaa |
3965506 |
T |
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| Q |
156 |
aattttcaa-gaaacagtatcctaaatgtagggtttcaagctttctttgacatccaaataatgcaggca |
223 |
Q |
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| T |
3965505 |
atctttcaatggaacagtttcctaaatgtaggatttcaagcttggtttgacgtccaaatgatgcaggca |
3965437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 223
Target Start/End: Original strand, 4016702 - 4016876
Alignment:
| Q |
48 |
agtataatttcaagagattgaggtaggtctggcagactttgtagtttatggcaacatcttatggctagatattgtagccttatatcatattcttaaaaca |
147 |
Q |
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|||| ||||||||||||| |||| || |||| ||| |||| ||||| || ||| |||||| ||||||||||||| || ||| | |||||||||||| |
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| T |
4016702 |
agtagaatttcaagagatggaggaagcactggtagattttgcagtttctgacaatatcttacctctagatattgtag--ttttattagattcttaaaaca |
4016799 |
T |
|
| Q |
148 |
tgaaggaaaattttcaa-gaaacagtatcctaaatgtagggtttcaagctttctttgacatccaaataatgcaggca |
223 |
Q |
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||||||||||||||||| | |||| | ||||||||||||| |||||||||| ||||||||||||||| ||||||||| |
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| T |
4016800 |
tgaaggaaaattttcaatggaacaatttcctaaatgtaggatttcaagcttgctttgacatccaaatgatgcaggca |
4016876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3804288 - 3804320
Alignment:
| Q |
1 |
cttgcattgttcagaaattgaagggaacaaccc |
33 |
Q |
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| T |
3804288 |
cttgcattgttcagaaattgaagggaacaaccc |
3804320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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