View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8044_low_24 (Length: 239)
Name: NF8044_low_24
Description: NF8044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8044_low_24 |
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| [»] scaffold0236 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: scaffold0236 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 23880 - 24102
Alignment:
| Q |
17 |
caaagatcccgctggaacttcaaagttggaggtgatatgtctgttcaaggttttagcttgaagcaatccaaatgaacctcccatgctaagggtcatcatg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23880 |
caaagatcccgctggaacttcaaagttggaggtgatatgtctgttcaaggttttagcttgaagcaatccaaatgaacctcccacgctaagggtcatcatg |
23979 |
T |
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| Q |
117 |
atcgcactagaccataatggaataactctaacaatggcttttagttcttctacttgatctactgtgcatagattccaggggtttattcttgaacggtcac |
216 |
Q |
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| T |
23980 |
atcccactagaccataatggaataactctaacaatggcttttagttcttctacttgatctactgtgcatagattccaggggtttattcttgaaccatcac |
24079 |
T |
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| Q |
217 |
attctatatcttgttcaaattcc |
239 |
Q |
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| T |
24080 |
atgctatatcttgttcaaattcc |
24102 |
T |
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Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 25273848 - 25273626
Alignment:
| Q |
17 |
caaagatcccgctggaacttcaaagttggaggtgatatgtctgttcaaggttttagcttgaagcaatccaaatgaacctcccatgctaagggtcatcatg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25273848 |
caaagatcccgctggaacttcaaagttggaggtgatatgtctgttcaaggttttagcttgaagcaatccaaatgaacttcccatgctaagggtcatcatg |
25273749 |
T |
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| Q |
117 |
atcgcactagaccataatggaataactctaacaatggcttttagttcttctacttgatctactgtgcatagattccaggggtttattcttgaacggtcac |
216 |
Q |
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| T |
25273748 |
atcccactagaccataatggaataactctaacaatggctttaaattcttctacctgatctactgtgcatagattccaggggtttattcttgaaccatcac |
25273649 |
T |
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| Q |
217 |
attctatatcttgttcaaattcc |
239 |
Q |
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| T |
25273648 |
atgctatatcttgttcaaattcc |
25273626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 43728451 - 43728285
Alignment:
| Q |
18 |
aaagatcccgctggaacttcaaagttggaggtgatatgtctgttcaaggttttagcttgaagcaatccaaatgaacctcccatgctaagggtcatcatga |
117 |
Q |
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| T |
43728451 |
aaagatcctgctggtacttcaaagtttgaggtgatatgtctgtctaaggatttagcttgcagcaatccaaatgatccaccaatgttaagagacatcatga |
43728352 |
T |
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| Q |
118 |
tcgcactagaccataatggaataactctaacaatggcttttagttcttctacttgatctactgtgca |
184 |
Q |
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| T |
43728351 |
tccctgtagaccataatggaataactctaacaagggcttttagttcttctacttgatctactgtgca |
43728285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 193
Target Start/End: Complemental strand, 43703709 - 43703565
Alignment:
| Q |
49 |
tgatatgtctgttcaaggttttagcttgaagcaatccaaatgaacctcccatgctaagggtcatcatgatcgcactagaccataatggaataactctaac |
148 |
Q |
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|||||||||||| |||| ||||||||| |||||||||||||| ||||| ||| ||| | ||| ||||||| | ||||| |||||||||||| ||| |
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| T |
43703709 |
tgatatgtctgtctaaggatttagcttgcagcaatccaaatgagcctccaatgttaatagacattgtgatcgctgttgaccacaatggaataactttaat |
43703610 |
T |
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| Q |
149 |
aatggcttttagttcttctacttgatctactgtgcatagattcca |
193 |
Q |
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| T |
43703609 |
aatggcttttagttcttcaacttgatctactgtgcatagactcca |
43703565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 193
Target Start/End: Complemental strand, 43714680 - 43714536
Alignment:
| Q |
49 |
tgatatgtctgttcaaggttttagcttgaagcaatccaaatgaacctcccatgctaagggtcatcatgatcgcactagaccataatggaataactctaac |
148 |
Q |
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|||||||||||| |||| ||||||||| |||||||||||||| ||||| ||| ||| | ||| ||||||| | ||||| |||||||||||| ||| |
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| T |
43714680 |
tgatatgtctgtctaaggatttagcttgcagcaatccaaatgagcctccaatgttaatagacattgtgatcgctgttgaccacaatggaataactttaat |
43714581 |
T |
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| Q |
149 |
aatggcttttagttcttctacttgatctactgtgcatagattcca |
193 |
Q |
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| T |
43714580 |
aatggcttttagttcttcaacttgatctactgtgcatagactcca |
43714536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 193
Target Start/End: Complemental strand, 43686851 - 43686707
Alignment:
| Q |
49 |
tgatatgtctgttcaaggttttagcttgaagcaatccaaatgaacctcccatgctaagggtcatcatgatcgcactagaccataatggaataactctaac |
148 |
Q |
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|||||||||||| |||| | |||||| |||||||||||||| ||||| ||| ||| | ||| |||| || | ||||| |||||||||||| ||| |
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| T |
43686851 |
tgatatgtctgtctaaggataaagcttgcagcaatccaaatgagcctccaatgttaatagacattgtgattccagttgaccacaatggaataactttaat |
43686752 |
T |
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| Q |
149 |
aatggcttttagttcttctacttgatctactgtgcatagattcca |
193 |
Q |
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| T |
43686751 |
aatggctttcaattcttcaacttgatctactgtgcagagactcca |
43686707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 193
Target Start/End: Complemental strand, 2690479 - 2690313
Alignment:
| Q |
27 |
gctggaacttcaaagttggaggtgatatgtctgttcaaggttttagcttgaagcaatccaaatgaacctcccatgctaagggtcatcatgatcgcactag |
126 |
Q |
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||||||||||| ||||| |||||| |||||||||| | ||| ||||| || ||||||||||| ||||| ||| |||| | ||||| ||| ||| |
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| T |
2690479 |
gctggaacttcgaagtttcgggtgatgtgtctgttcagcgatttcgcttgcagtaatccaaatgagcctccaatgttaagtgacatcaagatacttgtag |
2690380 |
T |
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| Q |
127 |
accataatggaataactctaacaatggcttttagttcttctacttgatctactgtgcatagattcca |
193 |
Q |
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|||| |||||||||||| ||| ||| ||||||| ||||||||||||||| | |||||||||| |||| |
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| T |
2690379 |
accacaatggaataactttaataatagcttttaattcttctacttgatcaattgtgcatagactcca |
2690313 |
T |
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