View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8044_low_3 (Length: 565)

Name: NF8044_low_3
Description: NF8044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8044_low_3
NF8044_low_3
[»] chr8 (1 HSPs)
chr8 (19-543)||(43020906-43021431)
[»] chr4 (1 HSPs)
chr4 (162-302)||(13675644-13675784)
[»] chr6 (1 HSPs)
chr6 (162-302)||(19964935-19965075)
[»] chr3 (2 HSPs)
chr3 (162-264)||(50805724-50805826)
chr3 (162-264)||(50870051-50870153)


Alignment Details
Target: chr8 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 19 - 543
Target Start/End: Complemental strand, 43021431 - 43020906
Alignment:
Q  19 atccaagttaaagtgtaatcaattaatgaaattaaacaaatgaaatccagagtggggtctgtaaaatagaagcagacacacaaagttggggcccttgtgg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43021431 atccaagttaaagtgtaatcaattaatgaaattaaacaaatgaaatgcagagtggggtctgaaaaatagaagcagacacacaaagttggggcccttgtgg 43021332  T
Q  119 aagaatctaaaaaaggtggataggagccaaattatgtttatatgttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaa 218  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43021331 aagaatctaaaaaaggtggataggagccatattatgtttatatgttatattcgtttctgcactactaccattcctcctgcgacttctttatgggaccaaa 43021232  T
Q  219 tctctggcataccaagaagccatataaaactgctagtaaaaatgctatctctggctatatatgcccccttcaaaagtatccaaaatcttccataaaagta 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43021231 tctctggcataccaagaagccatataaaactgctagtaaaaatgctatctctggccatatatgcccccttcaaaagtatccaaaatcttccataaaagta 43021132  T
Q  319 taataactgaatatcaccttttttaggcctt-gtttaaattttgaatacagtgtgaaaaggtatattttcaatttcaaattaaaccaatcatgtaatccg 417  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43021131 taataactgaatatcaccttttttaggccttagtttaaattttgaatacagtgttaaaaggtatattttcaatttcaaattaaaccaatcatgtaatccg 43021032  T
Q  418 atcctattgctgtttattttaattaattattacatcaattcttaagacttaagattcttcaaccatttgattgtaagagatccagcaaattttataggta 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43021031 atcctattgctgtttattttaattaattattacatcaattcttaagacttaagattcttcaaccatttgattgtaagagatccagcaaagtttataggta 43020932  T
Q  518 ttgtttcacatgatcatgcaaactat 543  Q
    ||||||||||||||||| ||||||||    
T  43020931 ttgtttcacatgatcatccaaactat 43020906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 162 - 302
Target Start/End: Original strand, 13675644 - 13675784
Alignment:
Q  162 gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat 261  Q
    |||||||||||||| ||| |||||||||||||||||| ||||| ||||||||| || | |||||||||||||||| |||||||||| |||||| | ||||    
T  13675644 gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggactaattttctggcataccaagaaaccatataaaaatgctagcacaaat 13675743  T
Q  262 gctatctctggctatatatgcccccttcaaaagtatccaaa 302  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  13675744 gctatctctatctatatatgcccccttcaaaagtatccaaa 13675784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 162 - 302
Target Start/End: Complemental strand, 19965075 - 19964935
Alignment:
Q  162 gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat 261  Q
    |||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| | | ||| |||||||||| |||||||||| |||||| | ||||    
T  19965075 gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggaccaattttttgggataccaagaaaccatataaaaatgctagcacaaat 19964976  T
Q  262 gctatctctggctatatatgcccccttcaaaagtatccaaa 302  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  19964975 gctatctctatctatatatgcccccttcaaaagtatccaaa 19964935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 162 - 264
Target Start/End: Complemental strand, 50805826 - 50805724
Alignment:
Q  162 gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat 261  Q
    |||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| | ||| |||||||||||| |||||||||| |||||| | ||||    
T  50805826 gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggaccaattttctagcataccaagaaaccatataaaaatgctagcacaaat 50805727  T
Q  262 gct 264  Q
    |||    
T  50805726 gct 50805724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 50870051 - 50870153
Alignment:
Q  162 gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat 261  Q
    |||||||||||||| ||| |||||||||||||||||| ||||| ||||||||| || | | | | |||||||||| |||||||||| |||||| | ||||    
T  50870051 gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggactaatttttttgtataccaagaaaccatataaaaatgctagcacaaat 50870150  T
Q  262 gct 264  Q
    |||    
T  50870151 gct 50870153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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