View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8044_low_4 (Length: 545)
Name: NF8044_low_4
Description: NF8044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8044_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 19611395 - 19610869
Alignment:
| Q |
1 |
aggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaacttcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
19611395 |
aggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaaaaattgcaaaacaggttcaaatttcat |
19611296 |
T |
|
| Q |
101 |
tgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19611295 |
tgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgc |
19611196 |
T |
|
| Q |
201 |
tgtcttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatggttggacactggcggttgccgaaatcgatgattgctaagcttca |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19611195 |
tgtcttttgatagctagagctgcaatccgaagatcgatatcgttgaattgttgatg-ttggacattggcggttgccgaaatcgatgattgttaagcttca |
19611097 |
T |
|
| Q |
301 |
gctaaagcataagcatgaacaaatgaatgaatgaataaagaataacagaatcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaa |
400 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19611096 |
gctaaagcagaagcatgaacaaatgaatgaatgaataaagaataacagaatcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaa |
19610997 |
T |
|
| Q |
401 |
ttgaattaattagaacaaaatcacgaaccctaagatgaagattctacaacgaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19610996 |
ttgaattaattagaacaaaatcacgaaccctaagatgaagattctacaacgaatggaatgctgatgaatcgagctatgaattgacgttgtgaattgaacg |
19610897 |
T |
|
| Q |
501 |
aagaatcgaagtgattattcgaggttgt |
528 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
19610896 |
aagaatcgaagtgattattcgaggttgt |
19610869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 45402247 - 45401720
Alignment:
| Q |
1 |
aggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaacttcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45402247 |
aggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttcat |
45402148 |
T |
|
| Q |
101 |
tgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45402147 |
tgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgc |
45402048 |
T |
|
| Q |
201 |
tgtcttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatggttggacactggcggttgccgaaatcgatgattgctaagcttca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
45402047 |
tgtcttttggtagctagagctgcaatccgaagattgatatcgttgaattcttgatggttggacactggtggttaccgaaatcgatgattgctaagcttca |
45401948 |
T |
|
| Q |
301 |
gctaaagcataagcatgaacaaatgaatgaatgaataaagaataacagaatcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45401947 |
gctaaagcataagcatgaacaaatgaatgaatgaataacgaataacagaatcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaa |
45401848 |
T |
|
| Q |
401 |
ttgaattaattagaacaaaatcacgaaccctaagatgaagattctacaacgaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45401847 |
ttgaattaattagaacaaaatcacgaaccctaagatgaagattctgcaatgaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacg |
45401748 |
T |
|
| Q |
501 |
aagaatcgaagtgattattcgaggttgt |
528 |
Q |
| |
|
||||||| |||||||||||||||||||| |
|
|
| T |
45401747 |
aagaatcaaagtgattattcgaggttgt |
45401720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 23361834 - 23361304
Alignment:
| Q |
1 |
aggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaacttcat |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
23361834 |
aggcattgcagaaagagacctctgaaatcgtatccaacactgaaacctcaaccaacaccaaaacctgcaaaaataattgcaaaacaggttcaaatttcat |
23361735 |
T |
|
| Q |
101 |
tgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23361734 |
tgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgc |
23361635 |
T |
|
| Q |
201 |
tgtcttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatggttggacactg---gcggttgccgaaatcgatgattgctaagct |
297 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23361634 |
tgtcttttggtagctagagctgcaatctgaagatcgatatcgttgaattattgatggttggacactgctggcggttgccgaaatcgatgattgctaagct |
23361535 |
T |
|
| Q |
298 |
tcagctaaagcataagcatgaacaaatgaatgaatgaataaagaataacagaatcaacaaattataactaagaacaaaaacacaaattatcacttatctc |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23361534 |
tcagctaaagcataagcatgaacaaatgaatgaatgaataacgaataacagaatcaacaaattataactaagaacaaaaacacaaattatcacttatctc |
23361435 |
T |
|
| Q |
398 |
aaattgaattaattagaacaaaatcacgaaccctaagatgaagattctacaacgaatggaatgctgatgaatcgagctatgaattgacgttgtgaactga |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
23361434 |
aaattgaattaattagaacaaaatcacgaaccctaagatgaagattctacaacgaatggaatgctgatgaatctagctatgaattgacgttgtgacttga |
23361335 |
T |
|
| Q |
498 |
acgaagaatcgaagtgattattcgaggttgt |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
23361334 |
acgaagaatcgaagtgattattcgaggttgt |
23361304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 47351546 - 47351506
Alignment:
| Q |
32 |
atccaacaccgaaacctcaaccaacaccaaaacctgcaaaa |
72 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
47351546 |
atccaacaccaaaaccgcaaccaacaccgaaacctgcaaaa |
47351506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 7600149 - 7599628
Alignment:
| Q |
1 |
aggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaacttcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7600149 |
aggcagtgcagaaagagacctctgaaatcgtatccaacacagaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttcat |
7600050 |
T |
|
| Q |
101 |
tgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7600049 |
tgagacaatttatcaaacacctcctatgcaacacaataataccttggaagaaaaaacttcactgtcaaatttcacaataatacaacg--ggaaacaatgc |
7599952 |
T |
|
| Q |
201 |
tgtcttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatggttggacactggcggttgccgaaatcgatgattgctaagcttca |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7599951 |
tgccttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatggttggacactggcggttgccgaaatcgatgattgctaagcttca |
7599852 |
T |
|
| Q |
301 |
gctaaagcataagcatgaacaaatgaatgaatgaataaagaataacagaatcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7599851 |
gctaaagcataagcatgaacaaatgaatgaat----aaagaataacagaatcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaa |
7599756 |
T |
|
| Q |
401 |
ttgaattaattagaacaaaatcacgaaccctaagatgaagattctacaacgaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacg |
500 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7599755 |
ttgaattaattagaacaaaatcacgagccctaagatgaagattctataacgaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacg |
7599656 |
T |
|
| Q |
501 |
aagaatcgaagtgattattcgaggttgt |
528 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
7599655 |
aagaatcgaagtgattattcgaggttgt |
7599628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 28462374 - 28462894
Alignment:
| Q |
1 |
aggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaacttcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28462374 |
aggcagtgcagaaagagacctctgaaatcgtatccaacacagaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttcat |
28462473 |
T |
|
| Q |
101 |
tgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28462474 |
tgagacaatttatcaaacacctcctatgcaacacaataataccttggaaga-aaaacttcactgtcaaatttcacaataatacaacg--ggaaacaatgc |
28462570 |
T |
|
| Q |
201 |
tgtcttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatggttggacactggcggttgccgaaatcgatgattgctaagcttca |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28462571 |
tgccttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatggttggacactggcggttgccgaaatcgatgattgctaagcttca |
28462670 |
T |
|
| Q |
301 |
gctaaagcataagcatgaacaaatgaatgaatgaataaagaataacagaatcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaa |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28462671 |
gctaaagcataagcatgaacaaatg----aatgaataaagaataacagaatcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaa |
28462766 |
T |
|
| Q |
401 |
ttgaattaattagaacaaaatcacgaaccctaagatgaagattctacaacgaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28462767 |
ttgaattaattagaacaaaatcacgaaccctaagatgaagattctataacgaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacg |
28462866 |
T |
|
| Q |
501 |
aagaatcgaagtgattattcgaggttgt |
528 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
28462867 |
aagaatcgaagtgattattcgaggttgt |
28462894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 54188531 - 54188605
Alignment:
| Q |
73 |
acaattgcaaaacaggttcaaacttcattgagacaatttatcaaacacctcctatgcaacacaataataccttgc |
147 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| ||| ||||| ||||||| || ||| |||||||||||||||| |
|
|
| T |
54188531 |
acaattgcaaaacacagtcaaatttcattgagtcaaattatcgaacacctgataggcagcacaataataccttgc |
54188605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 8835756 - 8835833
Alignment:
| Q |
5 |
agtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaa |
82 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
8835756 |
agtgcagaaagagacctttgaaatcccatccaacaccgaaacctcaaccaacacaaaaaactgcaaaaacaattgcaa |
8835833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 7710967 - 7710913
Alignment:
| Q |
96 |
ttcattgagacaatttatcaaacacctcctatgcaacacaataataccttgcaag |
150 |
Q |
| |
|
||||||||| ||| |||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
7710967 |
ttcattgagtcaaattatcaaacacctcatatgcaacacaatcataccttgcaag |
7710913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 3367619 - 3367693
Alignment:
| Q |
73 |
acaattgcaaaacaggttcaaacttcattgagacaatttatcaaacacctcctatgcaacacaataataccttgc |
147 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| ||| ||||||||||||| || ||| |||||||||||||||| |
|
|
| T |
3367619 |
acaattgcaaaacacagtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataataccttgc |
3367693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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