View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8044_low_5 (Length: 469)
Name: NF8044_low_5
Description: NF8044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8044_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 453
Target Start/End: Complemental strand, 43564295 - 43563854
Alignment:
| Q |
15 |
tgaacaaatgatcggaaggcttcgtaggcttggtgaaggagacaagttcaaaaaacatgaaagtggattgttattaggtcctaattcagctccttttaat |
114 |
Q |
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| T |
43564295 |
tgaacaaatgactggaaggcttcataggtttggtgaaggagacaagttccaaaaatatgaaagtggattgttactaggtcctaattcacctccttttaat |
43564196 |
T |
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| Q |
115 |
ccaaaaacgattaaggagttgatttcaaaaggaattgaacatgagcatttggggaagcaaagagagcaagcaattttatctaagagttctgatttggctg |
214 |
Q |
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| T |
43564195 |
ccaaaaacgattaaggagttgattttaaagggaattgaacatgagcatttgaggaaacaaagacaggaggcaatttcatctgaaagttctgatttggctg |
43564096 |
T |
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| Q |
215 |
agattgagtcaaagatcaaaaaactgataaaagaaattgatgatctctttggtggagaacaaagtagtagtgttcaaaaaagtgaatgtggaagcttgtg |
314 |
Q |
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| T |
43564095 |
aaattgagtcaaagatcgagaaattaataaaagaaattgatgatctctttggtggagaacaaagtagtattgttcaaaaaagtgagtgtggaagattttg |
43563996 |
T |
|
| Q |
315 |
ctgcaagg---aaaaggagtatggtttgaaggctttcacaagggatttgaggactaagttcaaaggtttggatgatgtttatgtgtggcatgcattgtgt |
411 |
Q |
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| T |
43563995 |
ttgtaaagaaaaaaaggagtatggtttgaaggctttcacaagggatttgaggactaagttcaaaggtttagatgatgtttatgtttggcatgcactttgt |
43563896 |
T |
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| Q |
412 |
ggtgcttggggtggtgtgaggccaggaaccacacatcttaat |
453 |
Q |
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| T |
43563895 |
ggttattggggtggtgtgagaccaggaacaacacaccttaat |
43563854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 446
Target Start/End: Complemental strand, 36432257 - 36431840
Alignment:
| Q |
8 |
ttggtgttgaacaaatgatcggaaggcttcgtaggcttggtgaaggagacaagttcaaaaaacatgaaagtggattgttattaggtcctaattcagctcc |
107 |
Q |
| |
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|||||| |||||| |||| || ||||||| |||||||| |||||| ||||||||||||||| | |||||||||||| | || |||||||||||| |||| |
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| T |
36432257 |
ttggtggtgaacagatgactgggaggcttcataggcttgatgaaggtgacaagttcaaaaaatacgaaagtggattggtgttgggtcctaattcacctcc |
36432158 |
T |
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| Q |
108 |
ttttaatccaaaaacgattaaggagttgatttcaaaaggaattgaacatgagcatttggggaagcaaagagagcaagcaattttatctaagagttctgat |
207 |
Q |
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| T |
36432157 |
ttttaatccgaaaacaattaaggagttgattacaaagggaattgaacatgagcatttggagagacaaagagaggaggcagttttatccaagagttctgat |
36432058 |
T |
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| Q |
208 |
ttggctgagattgagtcaaagatcaaaaaactgataaaagaaattgatgatctctttggtggagaacaaagtagtagtgttcaaaaaagtgaatgtggaa |
307 |
Q |
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| T |
36432057 |
ttggctgagattgagtcaaagatcaagcaattagtcaaagaaattgatgatctctttggtggagaagaaagtagtggtgctccaaaaagtgaat-tg--- |
36431962 |
T |
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| Q |
308 |
gcttgtgctgcaaggaaaaggagtatggtttgaaggctttcacaagggatttgaggactaagttcaaaggtttggatgatgtttatgtgtggcatgcatt |
407 |
Q |
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| T |
36431961 |
-----------------aaggactatggattgaaggctttcacaagggatttgaggactaagttcaaaggtttggatgatgtttatgtttggcatgcact |
36431879 |
T |
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| Q |
408 |
gtgtggtgcttggggtggtgtgaggccaggaaccacaca |
446 |
Q |
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| T |
36431878 |
ttgtggtgcttggggtggtgtgagacctggagccacaca |
36431840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 8 - 299
Target Start/End: Original strand, 43974300 - 43974591
Alignment:
| Q |
8 |
ttggtgttgaacaaatgatcggaaggcttcgtaggcttggtgaaggagacaagttcaaaaaacatgaaagtggattgttattaggtcctaattcagctcc |
107 |
Q |
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| T |
43974300 |
ttggtggtcaacaaatgactggaagacttcataggcttgatgaaggtgacaaattcaagaaatatgaaagtggattgttattaggtcctaatgcacctac |
43974399 |
T |
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| Q |
108 |
ttttaatccaaaaacgattaaggagttgatttcaaaaggaattgaacatgagcatttggggaagcaaagagagcaagcaattttatctaagagttctgat |
207 |
Q |
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| T |
43974400 |
ttataatccaaagaagtttcatgagttgatttcaaagggaattgaatatgagaaattggtgaaggaaaaagaggactctatcttatctaagagttctgat |
43974499 |
T |
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| Q |
208 |
ttggctgagattgagtcaaagatcaaaaaactgataaaagaaattgatgatctctttggtggagaacaaagtagtagtgttcaaaaaagtga |
299 |
Q |
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| T |
43974500 |
ttggcagagattgagtcaaatatcaaaaaagtaataagagaaatagatgatctctttggtggagaacaaagtcatagtgttccaaaaagtga |
43974591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 325 - 453
Target Start/End: Original strand, 43974593 - 43974721
Alignment:
| Q |
325 |
aaggagtatggtttgaaggctttcacaagggatttgaggactaagttcaaaggtttggatgatgtttatgtgtggcatgcattgtgtggtgcttggggtg |
424 |
Q |
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||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||| | |||||||||||||||| |
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| T |
43974593 |
aaggagtatggattgaaggctttcacaagggaccttaggactaagttcaaaggtttggatgatatttatgtttggcatgcactttgtggtgcttggggtg |
43974692 |
T |
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| Q |
425 |
gtgtgaggccaggaaccacacatcttaat |
453 |
Q |
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| T |
43974693 |
gtgtgaggccagaaaccacacaccttaat |
43974721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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