View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8044_low_6 (Length: 464)
Name: NF8044_low_6
Description: NF8044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8044_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 31072994 - 31072708
Alignment:
| Q |
8 |
ttggtgttctcaatatcttccatggggcaaacgaaggtaaaaatacttgaataatatagtaatacacttatgagcttgtgaaagaaattgaaaggtgaga |
107 |
Q |
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| T |
31072994 |
ttggtgttctcaatatcttccatggg-cgaacgaaggtaaaaatacttgaataatatagtaatacacttatgagcttgtgaaagaaattgaaaggtgaga |
31072896 |
T |
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| Q |
108 |
--aacataaattaaggtgcaatggaaattaccatagtaccgacattttgatgttatgagtactatgtgattatttttcaactttattgttatgcttaaac |
205 |
Q |
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| T |
31072895 |
gaaacataaattaaggtgcaatggaaattaccatagtaacgacattttgatgttatgagtactatatgattatttttcaactttattgttatgcttaaac |
31072796 |
T |
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| Q |
206 |
acatggac-nnnnnnngttaatgcactctccaataagaaaaaagggacacgttgaacaatcagcgtcttttttgggagtaagatctat |
292 |
Q |
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| T |
31072795 |
acatggacaaaaaaaagttaatgcactctccaattagaaaaaagggacacgttgaacaatcagcgtcttttttgggagtaagatctat |
31072708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 359 - 445
Target Start/End: Complemental strand, 31072357 - 31072271
Alignment:
| Q |
359 |
ggttaacattgtcaccataagatgtgtcaacaatctagagggcatgcaagccaattgtgaaccccctagcatataaacaatattaac |
445 |
Q |
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| T |
31072357 |
ggttaacattgtcaccacaagatgtgccaacaatctagagggcatgcaagccaattgtgaaccccctagcatataaacaacattaac |
31072271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 420
Target Start/End: Original strand, 26833254 - 26833287
Alignment:
| Q |
387 |
aacaatctagagggcatgcaagccaattgtgaac |
420 |
Q |
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| T |
26833254 |
aacaatctagagggcatgcaagccaattgtgaac |
26833287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 420
Target Start/End: Complemental strand, 19518484 - 19518450
Alignment:
| Q |
386 |
caacaatctagagggcatgcaagccaattgtgaac |
420 |
Q |
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| T |
19518484 |
caacaatccagagggcatgcaagccaattgtgaac |
19518450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 445
Target Start/End: Complemental strand, 10393198 - 10393142
Alignment:
| Q |
388 |
acaatctagagggcatgcaagccaattgtgaaccccctagcatataaacaatattaac |
445 |
Q |
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| T |
10393198 |
acaatctagaaggtatgcaagccaattgtgaa-cccttagcacataaacaacattaac |
10393142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 423
Target Start/End: Original strand, 11158358 - 11158394
Alignment:
| Q |
387 |
aacaatctagagggcatgcaagccaattgtgaacccc |
423 |
Q |
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| T |
11158358 |
aacaatctaaaaggcatgcaagccaattgtgaacccc |
11158394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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