View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8044_low_8 (Length: 441)
Name: NF8044_low_8
Description: NF8044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8044_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 29 - 433
Target Start/End: Original strand, 6622434 - 6622832
Alignment:
| Q |
29 |
cataatccataccactatttttcataagttccatcataaatagtgtttttctttcaccgatcgttccaattaattaatccaacacttccgccttttctta |
128 |
Q |
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| T |
6622434 |
cataatccataccactatttttcataagttccatcataaataatgtttttctttcgccgatcgttccaatt----aatccaacacttccgccttttctta |
6622529 |
T |
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| Q |
129 |
ttggcgtcagtagatcaacaacctagtttgaaatattatagaaatacactgttcaactctaagggagcatattgcc-aagtaattcacaaataaaataca |
227 |
Q |
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| T |
6622530 |
ttggcatcagtagatcaacaacctagtttgaaatattatagaaatacactcttcaactctaagggagcatattgcctaagtaattcataaataaaataca |
6622629 |
T |
|
| Q |
228 |
tnnnnnnnnnnnntaccttgcttctggtatatataaactcttctactttatgttcaatcttttcttcaatatgcccctcgaaagaagaatcaacatttta |
327 |
Q |
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| T |
6622630 |
t---aaaaaaaaatacctttcttccggtatatataaactcttctactttatgtttaattttttcttcaatatgcccctcaaaagaagaatcaacattttg |
6622726 |
T |
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| Q |
328 |
agtgctttcttttacttccatgagcacaaaattgtttagatcaaagtcataataaattaaaacatttacctcatctcgttcaacaattgagtttgtcatt |
427 |
Q |
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||||||||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6622727 |
agtgctttcttttactttcatgagcacaaaatcattaagatcaaagtcatagtaaattaaaacatttacctcatctcgttgaacaattgagtttgtcatt |
6622826 |
T |
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