View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8045_high_12 (Length: 470)

Name: NF8045_high_12
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8045_high_12
NF8045_high_12
[»] chr3 (18 HSPs)
chr3 (5-470)||(47760835-47761300)
chr3 (54-148)||(30191665-30191759)
chr3 (54-148)||(34472882-34472976)
chr3 (57-149)||(11379734-11379826)
chr3 (64-148)||(42329059-42329143)
chr3 (15-148)||(46412470-46412603)
chr3 (65-126)||(46415195-46415256)
chr3 (45-149)||(14633369-14633473)
chr3 (5-148)||(51014413-51014556)
chr3 (421-470)||(11396753-11396803)
chr3 (54-126)||(30194475-30194546)
chr3 (90-148)||(10054293-10054351)
chr3 (45-126)||(11377204-11377285)
chr3 (73-126)||(42321741-42321794)
chr3 (99-148)||(48098156-48098205)
chr3 (54-86)||(13917-13949)
chr3 (69-149)||(40465592-40465672)
chr3 (62-118)||(47759179-47759235)
[»] chr1 (15 HSPs)
chr1 (5-148)||(23341435-23341578)
chr1 (45-150)||(35585101-35585206)
chr1 (45-148)||(17684490-17684593)
chr1 (90-150)||(15356382-15356442)
chr1 (64-148)||(24271363-24271447)
chr1 (71-150)||(49263875-49263954)
chr1 (54-151)||(23344449-23344546)
chr1 (45-148)||(17687328-17687431)
chr1 (54-148)||(35574467-35574560)
chr1 (420-468)||(7604858-7604907)
chr1 (62-150)||(12792286-12792374)
chr1 (14-146)||(35186880-35187011)
chr1 (421-467)||(31768413-31768460)
chr1 (17-86)||(49259926-49259995)
chr1 (421-468)||(42773314-42773362)
[»] chr7 (9 HSPs)
chr7 (62-148)||(2206264-2206350)
chr7 (43-126)||(22292741-22292824)
chr7 (420-468)||(39704319-39704368)
chr7 (66-126)||(45414279-45414338)
chr7 (419-464)||(13764949-13764995)
chr7 (426-470)||(7448981-7449026)
chr7 (419-467)||(11646703-11646752)
chr7 (421-468)||(39445840-39445888)
chr7 (15-79)||(42734491-42734555)
[»] chr4 (14 HSPs)
chr4 (5-151)||(21168414-21168560)
chr4 (62-148)||(45936606-45936691)
chr4 (45-126)||(47658334-47658414)
chr4 (65-150)||(43890372-43890457)
chr4 (66-150)||(17931047-17931131)
chr4 (421-468)||(41813498-41813546)
chr4 (73-149)||(49790616-49790692)
chr4 (14-86)||(51026051-51026123)
chr4 (99-150)||(51029608-51029659)
chr4 (64-148)||(11284241-11284325)
chr4 (419-467)||(17404766-17404815)
chr4 (55-108)||(47873702-47873755)
chr4 (45-126)||(49792921-49793002)
chr4 (56-148)||(43887433-43887525)
[»] chr2 (11 HSPs)
chr2 (5-149)||(24108374-24108518)
chr2 (90-151)||(27131363-27131424)
chr2 (5-148)||(44074242-44074385)
chr2 (45-154)||(6975956-6976065)
chr2 (421-467)||(2040163-2040210)
chr2 (54-117)||(6978764-6978827)
chr2 (16-79)||(2777550-2777613)
chr2 (98-149)||(31297639-31297690)
chr2 (99-145)||(3259875-3259921)
chr2 (15-83)||(10358797-10358865)
chr2 (73-149)||(31298822-31298898)
[»] chr5 (7 HSPs)
chr5 (54-147)||(11356360-11356452)
chr5 (45-149)||(4722331-4722435)
chr5 (45-108)||(6791689-6791752)
chr5 (65-148)||(42346438-42346521)
chr5 (64-126)||(1690379-1690441)
chr5 (64-149)||(1696677-1696761)
chr5 (5-126)||(7486523-7486644)
[»] chr8 (3 HSPs)
chr8 (54-149)||(8036249-8036344)
chr8 (73-148)||(27641530-27641605)
chr8 (426-468)||(15610346-15610389)
[»] chr6 (6 HSPs)
chr6 (54-147)||(12398727-12398820)
chr6 (64-126)||(1260005-1260067)
chr6 (420-468)||(3066445-3066494)
chr6 (420-464)||(8977014-8977059)
chr6 (420-467)||(30906235-30906283)
chr6 (421-468)||(33051359-33051407)
[»] scaffold0688 (1 HSPs)
scaffold0688 (54-86)||(5901-5933)
[»] scaffold0003 (1 HSPs)
scaffold0003 (421-464)||(33478-33522)


Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 5 - 470
Target Start/End: Original strand, 47760835 - 47761300
Alignment:
Q  5 aacataacagcagttaacaaccgtcgaaagctagcaacaattaaccgttggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcattt 104  Q
    |||| ||| ||||||||||| ||| |||||| ||| ||| |||||| |||||||||| || ||||||||||||||||||||||  |||||| | ||||||    
T  47760835 aacacaacggcagttaacaatcgttgaaagccagcgacagttaaccattggcgcatgaccgaacggttgttaactaccgctgaaggtaaaagcgtcattt 47760934  T
Q  105 acttgtatcaataaaaagtattatatatcagaaaagcaattttcatt-aagttgtggagaaacat-aggtcaaaattacgcgcggcccattaatatccat 202  Q
    |||||||||||||  ||||||| ||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47760935 acttgtatcaataggaagtattctatgtcagaaaagcaattttcatttaagctgtggagaaacattaggtcaaaattacgcgcggcccattaatatccat 47761034  T
Q  203 agccttttgtagtttagcccttttgtcnnnnnnntccttgcatgattgaggg-tagtagttgctttgtggggtgcacgttgctcattcttgttgtatttc 301  Q
    |||||||||||||||||||||||||||       |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  47761035 agccttttgtagtttagcccttttgtcaaaaaaatccttgcatgattgaggggtagtagttgctttgtggggtgcacgttgctcattcttgttgtatttc 47761134  T
Q  302 atacaagacaacatgagcaagtcactcgttcatacccctacaagggaactgttgggtgnnnnnnncaacgaaattaaagaacaatgataacattgtcata 401  Q
    |||||||||||||||||||| ||||||||||||||    |||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  47761135 atacaagacaacatgagcaattcactcgttcatac----acaagggaactgttgggtgaaaaaaacaacgaaattaaagaacaatgataacattgtcata 47761230  T
Q  402 gttttgaatacttgactttactataacttttacccgtgctaccg-cccggtcataaataatggagaagtt 470  Q
    |||||||||||||||||||||||||||||||| |||||||||||  | ||||||||||||||||||||||    
T  47761231 gttttgaatacttgactttactataacttttatccgtgctaccgttcgggtcataaataatggagaagtt 47761300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 30191759 - 30191665
Alignment:
Q  54 ggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttc 148  Q
    |||||||||||| || ||||||||||||||||| | |||||| | |||||||||||| ||||||  ||||||| ||| |||||||||||||||||    
T  30191759 ggcgcatggcctgacagttgttaactaccgctgggggtaaaagcgtcatttacttgtgtcaataggaagtattctatgtcagaaaagcaattttc 30191665  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 34472882 - 34472976
Alignment:
Q  54 ggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttc 148  Q
    ||||||| ||||||||   |||||||  ||||| |||||||||| |||||||||||||||||||||||||||| | | | |||||||||||||||    
T  34472882 ggcgcatagcctaacgacagttaactgtcgctgggagtaaaaacgtcatttacttgtatcaataaaaagtattctctgttagaaaagcaattttc 34472976  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 11379734 - 11379826
Alignment:
Q  57 gcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttca 149  Q
    |||| |||||||||  ||||||  ||| || |||||||| | |||||||||||| |||||| |||||||| ||| ||||||||||||||||||    
T  11379734 gcattgcctaacggcagttaaccgccgttgggagtaaaagcgtcatttacttgtgtcaatagaaagtattctatgtcagaaaagcaattttca 11379826  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 42329059 - 42329143
Alignment:
Q  64 ctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttc 148  Q
    |||||| ||||||||| |||||||| |||||||| |||||||||||| ||||||  |||| |  ||| |||||||||||||||||    
T  42329059 ctaacgattgttaactgccgctgagggtaaaaacgtcatttacttgtgtcaataggaagtttcctatgtcagaaaagcaattttc 42329143  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 46412603 - 46412470
Alignment:
Q  15 cagttaacaaccgtcgaaagctagcaacaattaaccgttggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatca 114  Q
    |||||||||||||  | |||| |||  || ||||| || ||||||  |||||| |||| |||||| |||||| |  ||||| | |||||||||||| |||    
T  46412603 cagttaacaaccgctggaagccagcggcagttaactgtaggcgcacagcctaagggttattaactgccgctggggataaaagcgtcatttacttgtgtca 46412504  T
Q  115 ataaaaagtattatatatcagaaaagcaattttc 148  Q
    |||  ||||||| ||| |||||||||||||||||    
T  46412503 ataggaagtattctatgtcagaaaagcaattttc 46412470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 46415195 - 46415256
Alignment:
Q  65 taacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtatt 126  Q
    ||||||||||||||| |||||||| ||||||| ||||||||||||| ||||||  |||||||    
T  46415195 taacggttgttaactgccgctgagggtaaaaatatcatttacttgtgtcaataggaagtatt 46415256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 14633369 - 14633473
Alignment:
Q  45 ttaaccgttggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaat 144  Q
    ||||| || ||||||| || ||||||||||||| | |||||| | ||||||   |||||||||||| ||||||  ||||||| ||| |||||||| ||||    
T  14633369 ttaactgtcggcgcatagcttaacggttgttaattgccgctgggggtaaaagtgtcatttacttgtgtcaataggaagtattctatgtcagaaaaacaat 14633468  T
Q  145 tttca 149  Q
    |||||    
T  14633469 tttca 14633473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 51014556 - 51014413
Alignment:
Q  5 aacataacagcagttaacaaccgtcga-aagctagcaacaattaaccgttggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatt 103  Q
    |||| ||| ||||||||||||||  || |||| ||| ||| ||||| | |||| ||||||||||| ||||||||||  ||||||   ||||||| |||||    
T  51014556 aacacaacggcagttaacaaccgctgagaagccagcgacagttaactgctggc-catggcctaacagttgttaactgtcgctgatgataaaaacgtcatt 51014458  T
Q  104 tacttgtatcaataaaaagtattatatatcagaaaagcaattttc 148  Q
    ||||||| ||||||  ||||||| ||| | |||||| ||||||||    
T  51014457 tacttgtgtcaataggaagtattttatttaagaaaaacaattttc 51014413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 470
Target Start/End: Complemental strand, 11396803 - 11396753
Alignment:
Q  421 actataacttttacccgtgctaccgccc-ggtcataaataatggagaagtt 470  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||||||||||    
T  11396803 actagaacttttacccgtgctaccgcccgggtcataaacaatggagaagtt 11396753  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 30194475 - 30194546
Alignment:
Q  54 ggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtatt 126  Q
    ||||||||||||||| |||||||||| |||||| | |||||| | |||||||||||| ||||||  |||||||    
T  30194475 ggcgcatggcctaacagttgttaactgccgctg-gggtaaaagcgtcatttacttgtgtcaataggaagtatt 30194546  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 10054293 - 10054351
Alignment:
Q  90 gtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttc 148  Q
    |||||||| |||||||||||| | ||||  ||||||| ||| |||||||||||||||||    
T  10054293 gtaaaaacgtcatttacttgtgttaataggaagtattctatgtcagaaaagcaattttc 10054351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 11377285 - 11377204
Alignment:
Q  45 ttaaccgttggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtatt 126  Q
    ||||| || ||||||| |||||||||  ||||||| |||||| | ||||||   |||||||||||| |||||| ||||||||    
T  11377285 ttaactgtcggcgcattgcctaacggcagttaactgccgctgggggtaaaagtgtcatttacttgtgtcaatagaaagtatt 11377204  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 42321794 - 42321741
Alignment:
Q  73 gttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtatt 126  Q
    ||||||| |||||| | ||||||||||||||||||||| ||||||  |||||||    
T  42321794 gttaactgccgctgggggtaaaaacatcatttacttgtgtcaataggaagtatt 42321741  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 48098156 - 48098205
Alignment:
Q  99 tcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttc 148  Q
    |||||||||||| ||||||  ||||||| ||| |||||||||||||||||    
T  48098156 tcatttacttgtgtcaataggaagtattctatgtcagaaaagcaattttc 48098205  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 13917 - 13949
Alignment:
Q  54 ggcgcatggcctaacggttgttaactaccgctg 86  Q
    |||||||||||||||||||||||||| ||||||    
T  13917 ggcgcatggcctaacggttgttaactgccgctg 13949  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 40465672 - 40465592
Alignment:
Q  69 ggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttca 149  Q
    ||||||||||| |||||| | ||||||   |||||||||||| ||||||  |||| || ||| |||||||| |||||||||    
T  40465672 ggttgttaactgccgctgggggtaaaagtgtcatttacttgtgtcaataggaagttttctatgtcagaaaaacaattttca 40465592  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 47759235 - 47759179
Alignment:
Q  62 gcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataa 118  Q
    |||||||||||||||||| ||| || |||||||| | |||||||||| | |||||||    
T  47759235 gcctaacggttgttaactgccgttgggagtaaaatcgtcatttacttatgtcaataa 47759179  T

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Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 23341578 - 23341435
Alignment:
Q  5 aacataacagcagttaacaaccgtcgaaagctagcaacaattaaccgttggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcattt 104  Q
    |||| ||| ||||||||||||||  | |||| |||  || ||||| ||||| ||||||||||||||||||||||| ||| ||   |||||| ||||||||    
T  23341578 aacacaacggcagttaacaaccgctggaagccagcggcagttaactgttggtgcatggcctaacggttgttaactgccgttggaggtaaaagcatcattt 23341479  T
Q  105 acttgtatcaataaaaagtattatatatcagaaaagcaattttc 148  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||    
T  23341478 acttgtatcaataagaagtattatatgtcaaaaaagcaattttc 23341435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 35585206 - 35585101
Alignment:
Q  45 ttaaccgttggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaat 144  Q
    ||||| || ||||||| || ||||||||||||||||||||||   || ||||| |||||||||| ||||||||  ||||||| ||| |||||||| ||||    
T  35585206 ttaactgtcggcgcatagcataacggttgttaactaccgctggaggttaaaacgtcatttacttatatcaataggaagtattctatgtcagaaaaacaat 35585107  T
Q  145 tttcat 150  Q
    ||||||    
T  35585106 tttcat 35585101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 17684593 - 17684490
Alignment:
Q  45 ttaaccgttggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaat 144  Q
    ||||| || ||||||| |||||||||||||||||| |||||||| |||||| | |||||||||||| ||||||  |||||||   | ||| |||||||||    
T  17684593 ttaactgtcggcgcatagcctaacggttgttaactgccgctgagggtaaaagcgtcatttacttgtgtcaataggaagtattcattgtcaaaaaagcaat 17684494  T
Q  145 tttc 148  Q
    ||||    
T  17684493 tttc 17684490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 15356382 - 15356442
Alignment:
Q  90 gtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttcat 150  Q
    ||||||||||||||||||||| ||||||  ||||||| ||| |||||||||||||||||||    
T  15356382 gtaaaaacatcatttacttgtgtcaataggaagtattctatgtcagaaaagcaattttcat 15356442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 24271363 - 24271447
Alignment:
Q  64 ctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttc 148  Q
    ||||||||||||||||||||||| |  ||||||||||||||| || | |||||| ||| |||| ||| |||||||| ||||||||    
T  24271363 ctaacggttgttaactaccgctggggataaaaacatcatttatttatgtcaatagaaattattctatgtcagaaaatcaattttc 24271447  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 49263875 - 49263954
Alignment:
Q  71 ttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttcat 150  Q
    ||||||||| ||||||| |||||||   |||||||||||| |||||| |||||||| ||| | |||||||||||||||||    
T  49263875 ttgttaactgccgctgaaagtaaaagtgtcatttacttgtgtcaatagaaagtattctatgtgagaaaagcaattttcat 49263954  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 23344449 - 23344546
Alignment:
Q  54 ggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttcatt 151  Q
    |||||||||||||||||||||||||| ||||||   |||||| | |||||||||||| | |||| ||| ||||   | ||| ||||||||||||||||    
T  23344449 ggcgcatggcctaacggttgttaactgccgctggaggtaaaagcgtcatttacttgtgttaatagaaaatattcattgtcaaaaaagcaattttcatt 23344546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 17687328 - 17687431
Alignment:
Q  45 ttaaccgttggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaat 144  Q
    ||||| || |||| || ||||||| |||||||||| ||| ||||  ||||||| |||||||||||| |||| |  ||||||| || ||||||||| ||||    
T  17687328 ttaactgtcggcgtatagcctaacagttgttaactgccgttgaggataaaaacgtcatttacttgtgtcaacatgaagtattctaaatcagaaaaacaat 17687427  T
Q  145 tttc 148  Q
    ||||    
T  17687428 tttc 17687431  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 35574560 - 35574467
Alignment:
Q  54 ggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttc 148  Q
    ||||||| |||||||||  ||||||| |||||| | |||||| | |||||||||||| ||||||  ||||||| ||| | |||||||||||||||    
T  35574560 ggcgcattgcctaacggcagttaactgccgctgggggtaaaagcgtcatttacttgtgtcaataggaagtattctatgt-agaaaagcaattttc 35574467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 420 - 468
Target Start/End: Original strand, 7604858 - 7604907
Alignment:
Q  420 tactataacttttacccgtgctaccgcccgg-tcataaataatggagaag 468  Q
    ||||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  7604858 tactagaacttttacccgtgctaccgcccggatcataaacaatggagaag 7604907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 12792286 - 12792374
Alignment:
Q  62 gcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttcat 150  Q
    |||||||||||||||||| ||||||   |||||||| |||||||||||| ||| ||  |||||||   | ||| |||||||||||||||    
T  12792286 gcctaacggttgttaactgccgctggaggtaaaaacgtcatttacttgtgtcagtaggaagtattcattgtcaaaaaagcaattttcat 12792374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 35186880 - 35187011
Alignment:
Q  14 gcagttaacaaccgtcgaaagctagcaacaattaaccgttggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatc 113  Q
    ||||||||||||||  | |||| ||  ||| ||||| |||| ||||| |||||||  || |||||| ||| | || |||||| | |||||||||||||||    
T  35186880 gcagttaacaaccgctggaagccagtgacagttaactgttgacgcatagcctaacaattattaactgccgttaag-gtaaaagcgtcatttacttgtatc 35186978  T
Q  114 aataaaaagtattatatatcagaaaagcaattt 146  Q
    ||||  ||||||| ||  |||||||||||||||    
T  35186979 aataggaagtattctaagtcagaaaagcaattt 35187011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 467
Target Start/End: Original strand, 31768413 - 31768460
Alignment:
Q  421 actataacttttacccgtgctaccgcccgg-tcataaataatggagaa 467  Q
    |||| ||||||||||||||||||||||||| ||||||| |||||||||    
T  31768413 actagaacttttacccgtgctaccgcccggatcataaacaatggagaa 31768460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 49259995 - 49259926
Alignment:
Q  17 gttaacaaccgtcgaaagctagcaacaattaaccgttggcgcatggcctaacggttgttaactaccgctg 86  Q
    |||||||||||  |||||| |||  || ||||| || ||||||||| |||||||||||||||| ||||||    
T  49259995 gttaacaaccgctgaaagccagcggcagttaactgtcggcgcatggtctaacggttgttaactgccgctg 49259926  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 468
Target Start/End: Complemental strand, 42773362 - 42773314
Alignment:
Q  421 actataacttttacccgtgctaccgccc-ggtcataaataatggagaag 468  Q
    |||| ||||||||||||||||||||||| ||||||||| || |||||||    
T  42773362 actagaacttttacccgtgctaccgcccgggtcataaacaaaggagaag 42773314  T

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Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 2206264 - 2206350
Alignment:
Q  62 gcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttc 148  Q
    |||||||||  ||||||| |||||||| ||||||||||||||||||||| ||||||  ||||||| ||| |||||||||||||||||    
T  2206264 gcctaacggcagttaactgccgctgagggtaaaaacatcatttacttgtgtcaataggaagtattctatgtcagaaaagcaattttc 2206350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 22292741 - 22292824
Alignment:
Q  43 aattaaccgttggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtatt 126  Q
    ||||||| || ||||||| ||||||| |  ||||||| ||||||||||||||| |||||||||||||| |||||| ||| ||||    
T  22292741 aattaactgtcggcgcattgcctaactgcagttaactgccgctgagagtaaaagcatcatttacttgtgtcaatagaaaatatt 22292824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 468
Target Start/End: Original strand, 39704319 - 39704368
Alignment:
Q  420 tactataacttttacccgtgctaccgccc-ggtcataaataatggagaag 468  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  39704319 tactataacttttacccgtgctaccgcccaggtcataaacaatggagaag 39704368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 45414338 - 45414279
Alignment:
Q  66 aacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtatt 126  Q
    ||||||||||||||||||||| | |||||||| |||||||||||| | |||| ||||||||    
T  45414338 aacggttgttaactaccgctggg-gtaaaaacgtcatttacttgtgttaatagaaagtatt 45414279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 464
Target Start/End: Complemental strand, 13764995 - 13764949
Alignment:
Q  419 ttactataacttttacccgtgctaccgcccg-gtcataaataatgga 464  Q
    |||||| |||||||||||||||||||||||| |||||||| ||||||    
T  13764995 ttactagaacttttacccgtgctaccgcccgagtcataaacaatgga 13764949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 470
Target Start/End: Original strand, 7448981 - 7449026
Alignment:
Q  426 aacttttacccgtgctaccgcccg-gtcataaataatggagaagtt 470  Q
    |||||||| ||||||||||||||| |||||||| ||||||||||||    
T  7448981 aacttttatccgtgctaccgcccgagtcataaacaatggagaagtt 7449026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 467
Target Start/End: Original strand, 11646703 - 11646752
Alignment:
Q  419 ttactataacttttacccgtgctaccgc-ccggtcataaataatggagaa 467  Q
    |||||| ||||||||||||||||||||| | ||||||||| |||||||||    
T  11646703 ttactagaacttttacccgtgctaccgctcgggtcataaacaatggagaa 11646752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 468
Target Start/End: Complemental strand, 39445888 - 39445840
Alignment:
Q  421 actataacttttacccgtgctaccgccc-ggtcataaataatggagaag 468  Q
    |||| ||||||||||||||||||||||| ||||||||| || |||||||    
T  39445888 actagaacttttacccgtgctaccgcccgggtcataaacaaaggagaag 39445840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 42734555 - 42734491
Alignment:
Q  15 cagttaacaaccgtcgaaagctagcaacaattaaccgttggcgcatggcctaacggttgttaact 79  Q
    |||||||||||||  | ||||||||  || ||||| ||  |||||||||||||||||||||||||    
T  42734555 cagttaacaaccgctggaagctagcggcagttaactgtctgcgcatggcctaacggttgttaact 42734491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 21168560 - 21168414
Alignment:
Q  5 aacataacagcagttaacaaccgtcgaaagctagcaacaattaaccgttggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcattt 104  Q
    |||| ||||||||||||||||||  | |||| |||  || ||||| |  | ||||| |||||||||||||||||||| | || | |||||| | ||||||    
T  21168560 aacacaacagcagttaacaaccgctggaagccagcggcagttaactgccgacgcatagcctaacggttgttaactactgttgggggtaaaagcgtcattt 21168461  T
Q  105 acttgtatcaataaaaagtattatatatcagaaaagcaattttcatt 151  Q
    |||||| ||||||  ||||||| ||| ||||||||||||||||||||    
T  21168460 acttgtgtcaataggaagtattctatgtcagaaaagcaattttcatt 21168414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 45936691 - 45936606
Alignment:
Q  62 gcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttc 148  Q
    |||||||||| ||||| | |||||| | |||||||| |||||||||||| ||||||  ||||||| ||| |||||||||||||||||    
T  45936691 gcctaacggtagttaaatgccgctggg-gtaaaaacgtcatttacttgtgtcaataggaagtattctatgtcagaaaagcaattttc 45936606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 47658334 - 47658414
Alignment:
Q  45 ttaaccgttggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtatt 126  Q
    ||||| ||||||| |||  |||||||||||||||| |||||| |||||||| | |||||||||| |||||||| ||||||||    
T  47658334 ttaactgttggcgtatgatctaacggttgttaactgccgctg-gagtaaaagcgtcatttacttatatcaatagaaagtatt 47658414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 150
Target Start/End: Original strand, 43890372 - 43890457
Alignment:
Q  65 taacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttcat 150  Q
    ||||||||||||||| |||||| | |||||| | |||||||||||  ||||||  ||||||| ||| ||  |||||||||||||||    
T  43890372 taacggttgttaactgccgctgggggtaaaagcgtcatttacttgagtcaataggaagtattctatgtccaaaaagcaattttcat 43890457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 17931047 - 17931131
Alignment:
Q  66 aacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttcat 150  Q
    ||||||||||||||  ||||| | |||||  |||||||||||||| ||||||  |||| |  ||| |||||||||||||||||||    
T  17931047 aacggttgttaactgtcgctgggggtaaatgcatcatttacttgtgtcaataggaagtttcctatgtcagaaaagcaattttcat 17931131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 468
Target Start/End: Complemental strand, 41813546 - 41813498
Alignment:
Q  421 actataacttttacccgtgctaccgcccgg-tcataaataatggagaag 468  Q
    |||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  41813546 actagaacttttacccgtgctaccgcccggatcataaacaatggagaag 41813498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 49790692 - 49790616
Alignment:
Q  73 gttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttca 149  Q
    ||||||| | |||||| ||||||   |||||||||||| ||||||  ||||||| ||| ||||||||||||||||||    
T  49790692 gttaactgctgctgagggtaaaagtgtcatttacttgtgtcaataggaagtattctatgtcagaaaagcaattttca 49790616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 51026123 - 51026051
Alignment:
Q  14 gcagttaacaaccgtcgaaagctagcaacaattaaccgttggcgcatggcctaacggttgttaactaccgctg 86  Q
    ||||||||||||||| | ||||||||  || ||||| |  ||||||||| |||||||||||||||| ||||||    
T  51026123 gcagttaacaaccgttggaagctagcggcagttaactgccggcgcatggtctaacggttgttaactgccgctg 51026051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 51029608 - 51029659
Alignment:
Q  99 tcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttcat 150  Q
    |||||||||||| ||||||  ||||||| ||| |||||||||||||||||||    
T  51029608 tcatttacttgtgtcaataggaagtattctatgtcagaaaagcaattttcat 51029659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 11284325 - 11284241
Alignment:
Q  64 ctaacggttgttaactaccgctgagag-taaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttc 148  Q
    |||||||||||||||| |||||| ||| ||||||| |||||||||| | ||||||  |||| |  ||| |||||||||||||||||    
T  11284325 ctaacggttgttaactgccgctg-gagataaaaacgtcatttacttatgtcaataggaagtttcctatgtcagaaaagcaattttc 11284241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 467
Target Start/End: Original strand, 17404766 - 17404815
Alignment:
Q  419 ttactataacttttacccgtgctaccgc-ccggtcataaataatggagaa 467  Q
    |||||| ||||||||||||||||||||| | ||||||||| |||||||||    
T  17404766 ttactagaacttttacccgtgctaccgctcgggtcataaacaatggagaa 17404815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 47873702 - 47873755
Alignment:
Q  55 gcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttactt 108  Q
    ||||||||||||||||||||||||| |||||| | |||||| | ||| ||||||    
T  47873702 gcgcatggcctaacggttgttaactgccgctgggggtaaaagcgtcacttactt 47873755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 49792921 - 49793002
Alignment:
Q  45 ttaaccgttggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtatt 126  Q
    ||||| || ||||||| ||||||| |||||||||| |||||| | || ||| | |||||||||||| ||||||  |||||||    
T  49792921 ttaactgtcggcgcatagcctaactgttgttaactgccgctgggggtgaaagcgtcatttacttgtgtcaataggaagtatt 49793002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 43887525 - 43887433
Alignment:
Q  56 cgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttc 148  Q
    ||||| || ||||||||||||||| ||||||   ||||||  ||||||||||| | ||||||  |||| || ||| |||||||| ||||||||    
T  43887525 cgcatagcataacggttgttaactgccgctggatgtaaaagtatcatttacttttgtcaataggaagttttctatgtcagaaaaacaattttc 43887433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 24108374 - 24108518
Alignment:
Q  5 aacataacagcagttaacaaccgtcgaaagctagcaacaattaaccgttggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcattt 104  Q
    |||| |||| |||||||||||||  | || | ||| ||| ||||| || | ||| ||||||||| |||||||| || ||||| | |||||||||||||||    
T  24108374 aacacaacaacagttaacaaccgctggaaaccagcgacagttaactgtcgacgcttggcctaacagttgttaattatcgctgggggtaaaaacatcattt 24108473  T
Q  105 acttgtatcaataaaaagtattatatatcagaaaagcaattttca 149  Q
    |||||| ||||||  ||||||| ||| |||||||| |||||||||    
T  24108474 acttgtgtcaataggaagtattctatgtcagaaaaacaattttca 24108518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 27131363 - 27131424
Alignment:
Q  90 gtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttcatt 151  Q
    ||||||||||||||||||||| |||||| |||||||| ||| ||||||||||||||||||||    
T  27131363 gtaaaaacatcatttacttgtgtcaatagaaagtattttatgtcagaaaagcaattttcatt 27131424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 44074242 - 44074385
Alignment:
Q  5 aacataacagcagttaacaaccgtcgaaagctagcaacaattaaccgttggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcattt 104  Q
    |||| ||||||||||||||||||  | |||| |||  || ||||| || |||||||||||||||||  ||||||| |||||| | |||||| | ||||||    
T  44074242 aacacaacagcagttaacaaccgctggaagccagcggcagttaactgtcggcgcatggcctaacggcagttaactgccgctgggggtaaaagcgtcattt 44074341  T
Q  105 acttgtatcaataaaaagtattatatatcagaaaagcaattttc 148  Q
    | |||| ||||||  ||||||  ||| | |||||||||||||||    
T  44074342 atttgtgtcaataggaagtatcctatgttagaaaagcaattttc 44074385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 6976065 - 6975956
Alignment:
Q  45 ttaaccgttggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaat 144  Q
    ||||| || ||| ||| |||||||| || ||||||  || || | |||||||| |||||||||||| ||||||  ||||||| |||||||||||||||||    
T  6976065 ttaactgtcggcacatagcctaacgattcttaactgtcgttgggggtaaaaacgtcatttacttgtgtcaataggaagtattctatatcagaaaagcaat 6975966  T
Q  145 tttcattaag 154  Q
    |||| |||||    
T  6975965 tttcgttaag 6975956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 421 - 467
Target Start/End: Original strand, 2040163 - 2040210
Alignment:
Q  421 actataacttttacccgtgctaccgccc-ggtcataaataatggagaa 467  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||    
T  2040163 actagaacttttacccgtgctaccgcccgggtcataaataatggagaa 2040210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 6978764 - 6978827
Alignment:
Q  54 ggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaata 117  Q
    ||||||| |||||||||||||||||| |||||| | |||||||| | |||||||||| ||||||    
T  6978764 ggcgcatagcctaacggttgttaactgccgctgggggtaaaaacgttatttacttgtgtcaata 6978827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 2777550 - 2777613
Alignment:
Q  16 agttaacaaccgtcgaaagctagcaacaattaaccgttggcgcatggcctaacggttgttaact 79  Q
    |||||||||||| || |||| |||  |||||||| || |||||||| |||||||||||||||||    
T  2777550 agttaacaaccgccggaagccagcggcaattaactgtcggcgcatgtcctaacggttgttaact 2777613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 31297690 - 31297639
Alignment:
Q  98 atcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttca 149  Q
    ||||||||||||| ||||||  ||||||| ||| ||||||||||||||||||    
T  31297690 atcatttacttgtgtcaataggaagtattctatgtcagaaaagcaattttca 31297639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 3259921 - 3259875
Alignment:
Q  99 tcatttacttgtatcaataaaaagtattatatatcagaaaagcaatt 145  Q
    |||||||||||| |||||| |||||||| ||| ||||||||||||||    
T  3259921 tcatttacttgtgtcaatagaaagtattctatgtcagaaaagcaatt 3259875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 10358865 - 10358797
Alignment:
Q  15 cagttaacaaccgtcgaaagctagcaacaattaaccgttggcgcatggcctaacggttgttaactaccg 83  Q
    |||||||||| ||  | |||| ||| ||| ||||| || || |||||||||||||||||||||||||||    
T  10358865 cagttaacaatcgctggaagccagcgacagttaactgtcggtgcatggcctaacggttgttaactaccg 10358797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 31298822 - 31298898
Alignment:
Q  73 gttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttca 149  Q
    |||||||||||||| ||||||     |||||||||||| ||||||  |||| || ||||||| ||||||||||||||    
T  31298822 gttaactaccgctgggagtaatttggtcatttacttgtgtcaataggaagttttctatatcaaaaaagcaattttca 31298898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 11356452 - 11356360
Alignment:
Q  54 ggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaatttt 147  Q
    ||||||| |||||||||  |||||||||| ||| | |||||||| |||||||||||| |||||| |||||||| ||| ||||||||||||||||    
T  11356452 ggcgcattgcctaacggcagttaactaccactggg-gtaaaaacgtcatttacttgtgtcaatagaaagtattttatgtcagaaaagcaatttt 11356360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 4722435 - 4722331
Alignment:
Q  45 ttaaccgttggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaat 144  Q
    ||||| |||||||||| || |||||||||||||||  ||||| |  |||||   |||||||||||| ||||||  ||||||| ||| |||||||| ||||    
T  4722435 ttaactgttggcgcatagcgtaacggttgttaactgtcgctggggataaaagtgtcatttacttgtgtcaataggaagtattctatgtcagaaaaacaat 4722336  T
Q  145 tttca 149  Q
    |||||    
T  4722335 tttca 4722331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 6791752 - 6791689
Alignment:
Q  45 ttaaccgttggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttactt 108  Q
    ||||| || ||||||| |||||||||  |||||||||||||||| |||||| ||||||||||||    
T  6791752 ttaactgtcggcgcatagcctaacggcagttaactaccgctgagggtaaaagcatcatttactt 6791689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 42346438 - 42346521
Alignment:
Q  65 taacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttc 148  Q
    ||||||||||||||| | |||| | |||||| | |||||||||||| ||||||| |||| |  ||| |||||||||||||||||    
T  42346438 taacggttgttaactgctgctgggcgtaaaagcgtcatttacttgtgtcaataagaagtttcctatgtcagaaaagcaattttc 42346521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 1690441 - 1690379
Alignment:
Q  64 ctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtatt 126  Q
    |||||||||||||||| ||||||||  ||||||| |||||||||||| ||||||  |||||||    
T  1690441 ctaacggttgttaactgccgctgaggataaaaacgtcatttacttgtgtcaataggaagtatt 1690379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 1696677 - 1696761
Alignment:
Q  64 ctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttca 149  Q
    ||||||||||||||||  |||||| |||||||   |||||||||||| ||||||  |||| ||  || ||||||||||||||||||    
T  1696677 ctaacggttgttaactgtcgctgaaagtaaaagtgtcatttacttgtgtcaataggaagt-ttcaatgtcagaaaagcaattttca 1696761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 7486523 - 7486644
Alignment:
Q  5 aacataacagcagttaacaaccgtcgaaagctagcaacaattaaccgttggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcattt 104  Q
    |||| ||| ||||||||||||||  | |||| | | ||||||||| |  || ||||| |||||| ||||||||||  || || | |||||| | ||||||    
T  7486523 aacacaacggcagttaacaaccgctggaagccaacgacaattaactgccggtgcatgacctaacagttgttaactgtcgttgggggtaaaagcgtcattt 7486622  T
Q  105 acttgtatcaataaaaagtatt 126  Q
    |||||| |||||| ||||||||    
T  7486623 acttgtgtcaatagaaagtatt 7486644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 8036344 - 8036249
Alignment:
Q  54 ggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttca 149  Q
    ||||||| |||||| ||  ||||||| ||| || | |||||| | |||||||||||| ||||||  ||||||| ||| ||||||||||||||||||    
T  8036344 ggcgcattgcctaatggcagttaactgccgttgggggtaaaagcgtcatttacttgtgtcaataggaagtattctatgtcagaaaagcaattttca 8036249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 27641605 - 27641530
Alignment:
Q  73 gttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaattttc 148  Q
    ||||||||||||||||  |||    ||||||||||||| |||||| |||||||| ||| |||||||||||||||||    
T  27641605 gttaactaccgctgaggataatttgatcatttacttgtgtcaatagaaagtattctatgtcagaaaagcaattttc 27641530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 15610346 - 15610389
Alignment:
Q  426 aacttttacccgtgctaccgccc-ggtcataaataatggagaag 468  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||    
T  15610346 aacttttacccgtgctaccgcccgggtcataaacaatggagaag 15610389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 147
Target Start/End: Original strand, 12398727 - 12398820
Alignment:
Q  54 ggcgcatggcctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtattatatatcagaaaagcaatttt 147  Q
    ||||||| |||||||||  ||||||| |||||| |  ||||| | |||||||||||| ||||||  ||||||| |||  |||||||||||||||    
T  12398727 ggcgcattgcctaacggcagttaactgccgctggggataaaagcgtcatttacttgtgtcaataggaagtattctatgacagaaaagcaatttt 12398820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 1260005 - 1260067
Alignment:
Q  64 ctaacggttgttaactaccgctgagagtaaaaacatcatttacttgtatcaataaaaagtatt 126  Q
    |||| ||| ||| ||||||||||||  ||||||| |||||||||| |||||||| ||||||||    
T  1260005 ctaatggtagtttactaccgctgaggataaaaacgtcatttacttctatcaatagaaagtatt 1260067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 468
Target Start/End: Complemental strand, 3066494 - 3066445
Alignment:
Q  420 tactataacttttacccgtgctaccgcc-cggtcataaataatggagaag 468  Q
    ||||| ||||||||||||||||||||||  ||||||||| ||||||||||    
T  3066494 tactagaacttttacccgtgctaccgcctgggtcataaacaatggagaag 3066445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 464
Target Start/End: Complemental strand, 8977059 - 8977014
Alignment:
Q  420 tactataacttttacccgtgctaccgccc-ggtcataaataatgga 464  Q
    ||||| ||||||||||||||||||||||| ||||||||| ||||||    
T  8977059 tactagaacttttacccgtgctaccgcccgggtcataaacaatgga 8977014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 467
Target Start/End: Original strand, 30906235 - 30906283
Alignment:
Q  420 tactataacttttacccgtgctaccgccc-ggtcataaataatggagaa 467  Q
    ||||| ||||||||||||||||||||||| ||||||||| || ||||||    
T  30906235 tactagaacttttacccgtgctaccgcccgggtcataaacaacggagaa 30906283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 468
Target Start/End: Original strand, 33051359 - 33051407
Alignment:
Q  421 actataacttttacccgtgctaccgccc-ggtcataaataatggagaag 468  Q
    |||| |||||||| |||||||||||||| ||||||||| ||||||||||    
T  33051359 actagaacttttatccgtgctaccgcccgggtcataaacaatggagaag 33051407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 5901 - 5933
Alignment:
Q  54 ggcgcatggcctaacggttgttaactaccgctg 86  Q
    |||||||||||||||||||||| ||||||||||    
T  5901 ggcgcatggcctaacggttgtttactaccgctg 5933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 464
Target Start/End: Original strand, 33478 - 33522
Alignment:
Q  421 actataacttttacccgtgctaccgcccg-gtcataaataatgga 464  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||    
T  33478 actagaacttttacccgtgctaccgcccgagtcataaacaatgga 33522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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